ENST00000616527

Human non-coding transcript

Responsive image

lncRNA

Transcript ID ENST00000616527
Chromosome 11
Start 65501960
Stop 65504463
Strand +
Exons 2
Length 572 nt
Protein coding potential Low

Expession

Sample ID Sample type Expression (TPM)
ENCSR794NUEK562123.88351000000002
ENCSR113PYXK56296.503008
ENCSR866XLIK56290.897752
ENCSR530BOPK56282.303525
ENCSR192BPVK56276.159481
ENCSR034VBAK56275.186925
ENCSR346DZQK56273.303021
ENCSR943LIBK56273.088493
ENCSR416ZJHK56272.214911
ENCSR031RROK56271.959298
ENCSR721MXZK56270.07677
ENCSR143COQK56268.52545500000001
ENCSR154OBAK56267.830004
ENCSR778WPLK56266.969192
ENCSR843LYFK56266.254901
ENCSR126ARZK56265.704332
ENCSR419JMUK56264.318361
ENCSR874ZLIK56264.101187
ENCSR678WOAK56262.966248
ENCSR517JHYK56262.526989
ENCSR164MUKK56262.055588
ENCSR082UWFK56261.78321999999999
ENCSR000AEDGM1287861.121303000000005
ENCSR453HKSK56261.09964599999999
ENCSR219DXZK56260.948503
ENCSR688GVVK56260.742219999999996
ENCSR777EDLK56259.268544999999996
ENCSR844QNTK56258.302446999999994
ENCSR624XHGK56257.887167000000005
ENCSR077BPRK56257.275511
ENCSR244SIOK56253.815596
ENCSR954HAYK56253.555927000000004
ENCSR967QNTK56253.084993999999995
ENCSR770LYWK56252.72245899999999
ENCSR562CCAK56252.382225
ENCSR334BTAK56250.612865
ENCSR470PRVK56250.118934
ENCSR952QDQK56247.849357
ENCSR524YXQK56247.517348
ENCSR267RHPK56247.514041999999996
ENCSR155EZLK56247.035031
ENCSR552NBSK56246.795331
ENCSR192GBDK56246.327775
ENCSR795VAKK56246.106504
ENCSR152IWTK56246.011703999999995
ENCSR281IUFK56245.425432
ENCSR829EFLK56245.394213
ENCSR788YGGK56245.357306
ENCSR535YPKK56244.932045
ENCSR129ROEK56244.540589000000004
ENCSR454KYRK56243.83936
ENCSR754RJAK56243.695493
ENCSR631RFXK56243.321157
ENCSR251ABPK56241.515591
ENCSR231DXJK56239.748457
ENCSR164TLBK56237.728961
ENCSR775TMWK56237.681973
ENCSR079LMZK56237.49279
ENCSR384BDVK56236.73335
ENCSR174OYCK56235.499669
ENCSR945GURK56235.397479
ENCSR000YYNK56235.147129
ENCSR494UDFK56234.813095000000004
ENCSR222COTK56234.798639
ENCSR812TLYK56234.53288
ENCSR385UPQK56233.755701
ENCSR222ABKK56233.460947999999995
ENCSR823WTAK56233.239563000000004
ENCSR306IOFK56232.810611
ENCSR572FFXK56232.638931
ENCSR208GPEK56232.218986
ENCSR555LCEK56231.932584999999996
ENCSR382QKDHepG231.537218
ENCSR902WSKK56231.144546000000002
ENCSR047QHXK56230.482375
ENCSR379VXWK56230.237165
ENCSR032YMPK56229.521656
ENCSR341PZWK56228.553828999999997
ENCSR896MMUHepG227.884694
ENCSR504VXCA37527.824639
ENCSR958KSYHepG227.68008
ENCSR771ZZLK56227.603439
ENCSR874DVZK56227.309793
ENCSR556FNNK56227.136429999999997
ENCSR124KCFHepG226.979671000000003
ENCSR856CJKK56225.85912
ENCSR392HSJK56225.548607
ENCSR258VGDK56224.748824
ENCSR563YISK56224.448762
ENCSR542ESYHepG224.029545000000002
ENCSR060KRDK56223.62927
ENCSR269HQAK56223.335098000000002
ENCSR067GHDHepG223.284197
ENCSR336DFSK56223.203098
ENCSR610VTAHepG222.062348999999998
ENCSR517JDKHepG222.048182999999998
ENCSR713OLVHepG221.82976
ENCSR995JMSHepG221.467567000000003
ENCSR246RRQHepG221.142583
ENCSR388CNSHepG221.093248000000003
ENCSR594DNWHepG220.683426
ENCSR767LLPHepG220.651359
ENCSR355OQCHepG220.600270000000002
ENCSR689MIYHepG219.96431
ENCSR364GRMHepG219.442396
ENCSR960MSVHepG219.292749
ENCSR040WAKHepG219.263324
ENCSR691IVRHepG219.059962
ENCSR457WBKHepG218.894856
ENCSR060IWWHepG218.731873
ENCSR386YEVK56218.620252999999998
ENCSR110HAAHepG218.587436999999998
ENCSR345VVZK56218.337474
ENCSR374NMJHepG218.045494
ENCSR598GKQHepG218.018251
ENCSR529MBZK56217.756717000000002
ENCSR424QCWK56217.657795999999998
ENCSR929PXSHepG217.327792000000002
ENCSR585KOJHepG217.189666
ENCSR701GSVHepG216.970416
ENCSR809ISUK56216.828729
ENCSR968BBQHepG216.699402
ENCSR599PXDHepG216.674004
ENCSR422JMSHepG216.552004999999998
ENCSR644AIMHepG216.419124
ENCSR372UWVHepG216.38146
ENCSR782MXNHepG216.354948999999998
ENCSR450VQOHepG215.970977
ENCSR518JXYHepG215.835246
ENCSR322XVSK56215.596095000000002
ENCSR511BNYK56215.3049
ENCSR910ECLHepG215.260006
ENCSR776SXAHepG214.671626999999999
ENCSR281KCLHepG214.537301000000001
ENCSR003LSAHepG214.044395000000002
ENCSR116QBUHepG214.004464000000002
ENCSR746NIMK56213.719823000000002
ENCSR269ZAOHepG213.694606
ENCSR528ASXK56213.130679999999998
ENCSR744PAQHepG212.868352
ENCSR584JRBHepG212.308619
ENCSR689ZJCHepG211.779029
ENCSR104ABFHepG211.775416
ENCSR837QDNHepG211.649712
ENCSR808FBRHepG211.595046
ENCSR081IAOHepG211.02543
ENCSR635BOOHepG210.957111
ENCSR620HAAHepG210.504447
ENCSR135LXLHepG29.539953
ENCSR741YCAHepG29.394436
ENCSR092WKGK5629.343281
ENCSR770OWWK5629.086378999999999
ENCSR385TMYHepG28.182139
ENCSR611LQBK5628.166723
ENCSR477TRXHepG28.141483000000001
ENCSR896CFVHepG28.074337
ENCSR490DYIHepG28.029053
ENCSR243IGAHepG27.551317
ENCSR667PLJK5627.230607000000001
ENCSR712CSNK5626.598282000000001
ENCSR527QNCHepG26.4143930000000005
ENCSR676EKUHepG26.329609
ENCSR760EGMHepG26.3106290000000005
ENCSR599UDSK5625.701922
ENCSR788HVKHepG25.671149
ENCSR620OKSHepG25.593572
ENCSR426UUGHepG25.333304
ENCSR577OVPK5625.2914650000000005
ENCSR376FGRHepG25.213223
ENCSR264TUEHepG25.209121
ENCSR165VBDK5624.265594999999999
ENCSR000CQSendothelial cell of umbilical vein3.8500379999999996
ENCSR968YWYHepG23.5912699999999997
ENCSR300QFQK5623.230428
ENCSR389HFUHepG22.719646
ENCSR014VQSK5622.706187
ENCSR373KOFK5622.365561
ENCSR016XPBHepG22.174238
ENCSR568YRPSJCRH302.013851
ENCSR936TEDK5621.9913319999999999
ENCSR164OCTNCI-H4601.973114
ENCSR925SYZHepG21.775686
ENCSR656DQVHepG21.625117
ENCSR849STRK5621.343038
ENCSR205VSQK5621.152808
ENCSR222LRLK5620.987348
ENCSR023HWIK5620.973139
ENCSR047AJAK5620.7789470000000001
ENCSR210DMLHepG20.728144
ENCSR629RUGHepG20.727534
ENCSR913ZWRHepG20.7117319999999999
ENCSR047VPWHepG20.694631
ENCSR310VNDK5620.629463
ENCSR820ROHHepG20.570994
ENCSR495YSSK5620.559353
ENCSR410MIQK5620.553153
ENCSR755KOMHepG20.492072
ENCSR000CQLK5620.441528
ENCSR312HJYK5620.360344
ENCSR357XTUnatural killer cell0.351702
ENCSR000CPDHepG20.34318200000000004
ENCSR129RWDK5620.334757
ENCSR978CSQK5620.328762
ENCSR529JNJK5620.32852
ENCSR822SUGairway epithelial cell0.327261
ENCSR207QGWK5620.300902
ENCSR792XFPK5620.290222
ENCSR732ICLK5620.284215
ENCSR898NWEK5620.268885
ENCSR330KHNHepG20.258495
ENCSR334HNJK5620.258235
ENCSR746EKSHepG20.241038
ENCSR165BCFK5620.232423
ENCSR000CQOkeratinocyte0.21431399999999998
ENCSR905LVOCD14-positive monocyte0.139498
ENCSR449GLLB cell0.13450299999999998
ENCSR000AELK5620.131227
ENCSR000CUKthoracic aorta endothelial cell0.087398
ENCSR034RPUforeskin keratinocyte0.07309
ENCSR000AENK5620.06618099999999999
ENCSR700BEWmesendoderm0.064474
ENCSR000AAMpulmonary artery endothelial cell0.053946
ENCSR000AAVuterine smooth muscle cell0.052346000000000004
ENCSR169QQWK5620.044893999999999996
ENCSR000CPHK5620.044660000000000005
ENCSR000AFDoccipital lobe0.022869
ENCSR620NSNbronchus fibroblast of lung0.00853
ENCSR000CUGvein endothelial cell0.007743000000000001
ENCSR004OSIHepG20.006681
ENCSR000CULfibroblast of villous mesenchyme0.005682
ENCSR000CUFosteoblast0.002366
ENCSR000AEUliver0.0006129999999999999
ENCSR921KDSK5620.000436
ENCSR486AIOHepG20.000195
Responsive image

FASTA

>ENST00000616527
AGTCTTAGAATGGAAAAAGTAAAGAAATATCAACTTCCAAGTTGGCAAGTAACTCCCAATGATTTAGTTTTTTTCCCCCCAGTTTGAATTGGGAAGCTGGGGGAAGTTAAATATGAGCCACTGGGTGTACCAGTGCATTAATTTGGGCAAGGAAAGTGTCATAATTTGATACTGTATCTGTTTTCCTTCAAAGTATAGAGCTTTTGGGGAAGGAAAGTATTGAACTGGGGGTTGGTCTGGCCTACTGGGCTGACATTAACTACAATTATGGGAAATGCAAAAGTTGTTTGGATATGGTAGTGTGTGGTTCTCTTTTGGAATTTTTTTCAGGTGATTTAATAATAATTTAAAACTACTATAGAAACTGCAGAGCAAAGGAAGTGGCTTAATGATCCTGAAGGGATTTCTTCTGATGGTAGCTTTTGTATTATCAAACTTCACAGAGAATGCAGTTGTCTTGACTTCAGGTCTGTCTGTTCTGTTGGCAAGTAAATGCAGTACTGTTCTGATCCCGCTGCTATTAGAATGCATTGTGAAACGACTGGAGTATGATTAAAAGTTGTGTTCCCCAA

Disease and interactions

DiseasePMIDDysfunction_typeData source
gallbladder cancer27420766expressionPMC6372806
gastric cancer27887846expressionPMC6372806
renal cell carcinoma25480417expressionPMC6372806
gastric cancer28942451regulatedPMC6372806
endometrial cancer27693631expressionPMC6372806
esophageal cancer25613496regulatedPMC6372806
osteosarcoma25431257regulatedPMC6372806
25773124PMC6372806
hepatocellular carcinoma28469957expressionPMC6372806
osteosarcoma28346809expressionPMC6372806
renal cell carcinoma25600645expressionPMC6372806
28535533expressionPMC6372806
bladder cancer24449823expressionPMC6372806
gastric cancer27259812expressionPMC6372806
breast cancer28915533expressionPMC6372806
breast cancer26917489regulatedPMC6372806
26335021PMC6372806
gastric cancer25280565expressionPMC6372806
hepatocellular carcinoma21678027expressionPMC6372806
colorectal cancer25025966expressionPMC6372806
cholangiocarcinoma28059437expressionPMC6372806
multiple myeloma28295550expressionPMC6372806
tongue cancer28260102expressionPMC6372806
glioma26619802expressionPMC6372806
cervical cancer26242259expressionPMC6372806
colorectal cancer25446987expressionPMC6372806
mantle cell lymphoma27998273expressionPMC6372806
cervical cancer26798987expressionPMC6372806
colorectal cancer28069878expressionPMC6372806
thyroid cancer27470543expressionPMC6372806
bladder cancer28648755expressionPMC6372806
oral squamous cell carcinoma28926115expressionPMC6372806
hepatocellular carcinoma28543721expressionPMC6372806
prostate cancer23845456expressionPMC6372806
gastric cancer28276823expressionPMC6372806
bladder cancer23153939expressionPMC6372806
non-small-cell lung cancer25217850expressionPMC6372806
renal cell carcinoma27655020expressionPMC6372806
choriocarcinoma29096355expressionPMC6372806
oral squamous cell carcinoma26522444expressionPMC6372806
breast cancer27197265expressionPMC6372806
lung cancer23243023expressionPMC6372806
hypertension28056547expressionPMC6372806
hepatocellular carcinoma24468535expressionPMC6372806
pancreatic cancer25269958expressionPMC6372806
osteosarcoma26575981expressionPMC6372806
breast cancer26676637expressionPMC6372806
thyroid cancer28543663expressionPMC6372806
hepatocellular carcinoma28720061expressionPMC6372806
multiple myeloma25187517expressionPMC6372806
tongue cancer27586393expressionPMC6372806
gastric cancer28268166expressionPMC6372806
calcific aortic valve disease28522163expressionPMC6372806
esophageal cancer26493997expressionPMC6372806
pancreatic cancer28701723expressionPMC6372806
osteosarcoma28098894expressionPMC6372806
liver fibrosis26435214expressionPMC6372806
endometrial cancer25085246regulatedPMC6372806
nasopharyngeal carcinoma27584791regulatedPMC6372806
esophageal cancer27935117expressionPMC6372806
colorectal cancer29436635expressionPMC6372806
lung cancer28615056regulatedPMC6372806
esophageal cancer27470544expressionPMC6372806
glioma26938295expressionPMC6372806
osteoarthritis28590075expressionPMC6372806
hepatocellular carcinoma28722813expressionPMC6372806
29051139expressionPMC6372806
gallbladder cancer29058818expressionPMC6372806
retinoblastoma29073720expressionPMC6372806
diabetes mellitus29110299expressionPMC6372806
22487937expressionPMC6372806
multiple myeloma24583225expressionPMC6372806
Parkinson's disease27021022expressionPMC6372806
glioma29202181expressionPMC6372806
osteosarcoma29204769expressionPMC6372806
multiple myeloma29214735expressionPMC6372806
non-small-cell lung cancer29215698expressionPMC6372806
pancreatic cancer29215734expressionPMC6372806
colon cancer29226325expressionPMC6372806
29227193expressionPMC6372806
29258822expressionPMC6372806
29274336expressionPMC6372806
osteosarcoma29290771expressionPMC6372806
esophageal squamous cell carcinoma25538231regulationPMC5753334
gallbladder cancer24658096regulationPMC5753334
colon cancer25546229regulationPMC5753334
colorectal cancer25031737regulationPMC5753334
bladder cancer24373479regulationPMC5753334
breast cancer22492512regulationPMC5753334
breast cancer22996375regulationPMC5753334
breast cancer24499465regulationPMC5753334
cancer23463798regulationPMC5753334
cancer24757675regulationPMC5753334
tumor24721780regulationPMC5753334
prostate cancer23726266PMC5753334
cervical cancer24932303PMC5753334
pancreatic ductal adenocarcinoma24815433PMC5753334
nasopharyngeal carcinoma23688988PMC5753334
bladder cancer22722759PMC5753334
gastric cancer24857172PMC5753334
colorectal cancer24244343PMC5753334
melanoma24892958PMC5753334
breast cancer24525122PMC5753334
neuroblastoma24742640PMC5753334
prostate cancer22349460PMC5753334
osteosarcoma17660802PMC5753334
non-small cell lung cancer24313945PMC5753334
multiple myeloma25369863PMC5753334
breast cancer26918449PMC5753334
breast cancer 26926567PMC5753334
gastric cancer 26871474PMC5753334
acute myocardial infarction25035150PMC5753334
diabetes mellitus25356875PMC5753334
glioblastoma25772239PMC5753334
ovarian cancer24379988PMC5753334
esophageal squamous cell carcinoma27015363PMC5753334
colorectal cancer21503572PMC5753334
lung cancer22491206PMC5753334
hepatocelluar carcinoma22493738mutationPMC5753334
paraspeckle disintegration19188602mutationPMC5753334
renal cancer26461224interactionPMC5753334
nasopharyngeal carcinoma26482776interactionPMC5753334
cervical cancer26311052interactionPMC5753334
non-small cell lung cancer26265046interactionPMC5753334
lung cancer26415832interactionPMC5753334
"hepatocellular carcinoma
prostate cancer26516927interactionPMC5753334
cervical cancer20213048InteractionPMC5753334
non-small-cell lung cancer25036876interactionPMC5753334
breast cancer26191181interactionPMC5753334
pre-eclampsia26722461interactionPMC5753334
breast cancer26275461interactionPMC5753334
glioma26649728interactionPMC5753334
lung adenocarcinoma20937273interactionPMC5753334
cervical cancer26400521expressionPMC5753334
proliferative vitreoretinopathy26241674expressionPMC5753334
gastric cancer26096073expressionPMC5753334
non-small cell lung cancer26131129expressionPMC5753334
non-small cell lung cancer22088988expressionPMC5753334
triple-negative breast cancer25996380expressionPMC5753334
hepatocelluar carcinoma16878148expressionPMC5753334
pancreatic cancer25811929expressionPMC5753334
pituitary adenoma24469926expressionPMC5753334
pancreatic cancer25481511expressionPMC5753334
glioma25613066expressionPMC5753334
non-small cell lung cancer12970751expressionPMC5753334
esophageal squamous cell carcinoma26406400expressionPMC5753334
laryngeal squamous cell carcinoma25257554expressionPMC5753334
endometrial stromal sarcoma16441420expressionPMC5753334
bladder cancer24006935expressionPMC5753334
cancer20711585expressionPMC5753334
cancer20864030expressionPMC5753334
cancer23660942expressionPMC5753334
decreased myogenesis23485710expressionPMC5753334
diabetes mellitus24436191expressionPMC5753334
hepatocelluar carcinoma17006932expressionPMC5753334
hepatocelluar carcinoma24183851expressionPMC5753334
lung adenocarcinoma19690017expressionPMC5753334
lung cancer24667321expressionPMC5753334
non-small cell lung cancer21550244expressionPMC5753334
non-small cell lung cancer21903344expressionPMC5753334
non-small cell lung cancer22817756expressionPMC5753334
osteosarcoma20951849expressionPMC5753334
small cell lung cancer22928560expressionPMC5753334
papillary thyroid carcinoma25997963expressionPMC5753334
neuroblastoma20149803expressionPMC5753334
lung cancer26137228expressionPMC5753334
laryngeal squamous cell carcinoma24817925expressionPMC5753334
Responsive image
Level of interactionTypeTargetPMIDData source
DNA-TFregulationCREB20149803PMC5753334
RNA-ProteinbindingSR20797886PMC5753334
RNA-ProteinbindingSR proteins 20797886PMC5753334
RNA-ProteinregulationSR protein family20864030PMC5753334
RNA-ProteinregulationSRSF120864030PMC5753334
RNA-Proteinbindingp54nrb21444682PMC5753334
RNA-ProteinbindingPSF21444682PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
RNA-ProteinregulationRNPS122355166PMC5753334
RNA-ProteinregulationSRm16022355166PMC5753334
RNA-ProteinregulationIBP16022355166PMC5753334
RNA-Proteinregulationpre-mRNA splicing factors23698766PMC5753334
RNA-DNAregulationBcl-225036876PMC5753334
RNA-DNAbindingSp1 and LTBP3 promoter25187517PMC5753334
regulationCisplatin and paclitaxel25257554PMC5753334
RNA-RNAregulationSiRNA25280565PMC5753334
RNA-ProteinregulationPI3K/AKT signaling pathway25431257PMC5753334
RNA-RNAregulationmiR-101 and miR-21725538231PMC5753334
RNA-ProteinregulationCCL525546229PMC5753334
RNA-ProteinregulationATM-CHK2 pathway25613496PMC5753334
RNA-ProteinregulationRANKL25817340PMC5753334
regulationPI3K-AKT pathway26191181PMC5753334
RNA-RNAregulationmiRNA-12426242259PMC5753334
RNA-ProteinbindingTDP-4326265046PMC5753334
RNA-RNAregulationhsa-miR-126275461PMC5753334
RNA-RNAregulationmiR-14526311052PMC5753334
DNA-ProteinregulationSp1/326352013PMC5753334
RNA-ProteinregulationEZH2 (enhancer of zeste homolog 2) and H3K27me326415832PMC5753334
DNA-RNAregulationmiR-21726415832PMC5753334
RNA-RNAbindingmiR-200s26461224PMC5753334
RNA-RNAregulationmiR-126482776PMC5753334
RNA-ProteinbindingEZH226516927PMC5753334
RNA-ProteinregulationN-cadherin, Vimentin, E-cadherin26522444PMC5753334
RNA-ProteinregulationZO-1, occludin and claudin-526619802PMC5753334
RNA-RNAregulationmiR-14026619802PMC5753334
regulationERK/MAPK signaling26649728PMC5753334
RNA-ProteinregulationSox2 and Nestin26649728PMC5753334
RNA-RNAregulationHsa-miR-126676637PMC5753334
RNA-Proteinregulationpro-apoptotic proteins including cleaved caspase-3, cleaved caspase-9 and cleaved poly (ADP-ribose) 26722461PMC5753334
RNA-DNAregulationPCDH1026871474PMC5753334
RNA-ProteinbindingEZH226871474PMC5753334
RNA-RNAbindingmiR-124 26918449PMC5753334
RNA-DNAregulationcyclin-dependent kinase 4 (CDK4)26918449PMC5753334
RNA-DNAregulationcdc4226926567PMC5753334
RNA-RNAbindingmiR-1 26926567PMC5753334

Conservation

Conserved in: 10 species
Not found in: 1 species
Most distant counterpart in: Marmoset
Conserved species: Chimp, Bonobo, Gorilla, Orangutan, Rhesus, Crab-eating macaque, Atys, Baboon, Green monkey, Marmoset
Not found in: Lemur
Responsive image
You are here

Human

ENST00000616527

Counterpart found

Chimp

TCONS_00020732

Exonic Identity 99%

Locus Identity 99%
Counterpart found

Bonobo

TCONS_00022393

Exonic Identity 99%

Locus Identity 99%
Counterpart found

Gorilla

TCONS_00005532

Exonic Identity 24%

Locus Identity 65%
Counterpart found

Orangutan

TCONS_00007273

Exonic Identity 8%

Locus Identity 2%
Counterpart found

Rhesus

TCONS_00069425

Exonic Identity 0%

Locus Identity 0%
Counterpart found

MacacaFascicularis

TCONS_00108125

Exonic Identity 24%

Locus Identity 96%
Counterpart found

Atys

TCONS_00089607

Exonic Identity 24%

Locus Identity 96%
Counterpart found

Baboon

TCONS_00096371

Exonic Identity 0%

Locus Identity 0%
Counterpart found

GreenMonkey

TCONS_00003675

Exonic Identity 96%

Locus Identity 95%
Counterpart found

Marmoset

TCONS_00083298

Exonic Identity 0%

Locus Identity 0%
Counterpart not found

Lemur

ENST00000616527

Human non-coding transcript

Open the region of interest in the ENSEMBL Browser

ENSEMBL Browser

Check the reference ENSEMBL
transcript ID

ENSEMBL Transcript

Open the region of interest in the UCSC Genome Browser

UCSC Genome Browser