ENST00000620902

Human non-coding transcript

Reference

Relation to reference Complete match of intron chain
Reference ENSEMBL ID ENST00000620902
Reference alias MALAT1
Biotype of reference transcript lincRNA
Reference Gene ID ENSG00000251562
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Isoforms

ENSG00000251562 MSTRG.22374.97 MSTRG.22375.13 MSTRG.22375.14 MSTRG.22375.19 ENST00000544868 MSTRG.22374.32 MSTRG.22374.15 MSTRG.22374.103 MSTRG.22374.72 MSTRG.22374.13 MSTRG.22374.55 MSTRG.22374.56 MSTRG.22374.50 MSTRG.22374.52 MSTRG.22374.59 MSTRG.22374.38 ENST00000618925 MSTRG.22375.87 MSTRG.22375.81 MSTRG.22375.62 MSTRG.22375.69 MSTRG.22375.44 MSTRG.22375.49 ENST00000617791 MSTRG.22375.28 MSTRG.22375.22 MSTRG.22375.20 MSTRG.22375.21 ENST00000619449 ENST00000616691 MSTRG.22374.83 ENST00000610851 MSTRG.22374.138 ENST00000618132 MSTRG.22374.116 MSTRG.22374.117 MSTRG.22374.119 MSTRG.22374.69 MSTRG.22375.97 MSTRG.22374.12 MSTRG.22374.144 ENST00000616527 ENST00000620902 MSTRG.22375.2 MSTRG.22375.56 MSTRG.22375.52 ENST00000508832 MSTRG.22375.34 MSTRG.22374.6 MSTRG.22374.8 MSTRG.22374.9
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lncRNA

Transcript ID ENST00000620902
Chromosome 11
Start 65499042
Stop 65499706
Strand +
Exons 2
Length 352 nt
Protein coding potential Low

Expession

Sample ID Sample type Expression (TPM)
ENCSR406SAWupper lobe of left lung2073.864722
ENCSR551NIIlower leg skin1174.667226
ENCSR862RGXsuprapubic skin752.358471
ENCSR800WIYtransverse colon696.753789
ENCSR480SLDsuprapubic skin661.004225
ENCSR474TRGesophagus squamous epithelium552.279867
ENCSR201WVASK-MEL-5403.726898
ENCSR450ENKsuprapubic skin383.520469
ENCSR313CODupper lobe of left lung332.803567
ENCSR544SAUPeyer's patch304.036081
ENCSR894WMQmyocyte289.86334700000003
ENCSR460YCSlower leg skin244.11094900000003
ENCSR967JPIgastrocnemius medialis236.529366
ENCSR802HPMPeyer's patch226.603084
ENCSR257NIRPeyer's patch224.646426
ENCSR369RVNcardiac ventricle fibroblast212.564458
ENCSR035SKVgastroesophageal sphincter200.904194
ENCSR321PGVlower leg skin180.563727
ENCSR485WBRgastroesophageal sphincter169.973333
ENCSR330UMQspleen158.978158
ENCSR528ZKNgastroesophageal sphincter155.681957
ENCSR354QPNesophagus squamous epithelium144.15653700000001
ENCSR080HPTomental fat pad139.21338500000002
ENCSR740YMSgastroesophageal sphincter134.05232900000001
ENCSR351OTLesophagus squamous epithelium130.28669
ENCSR754WLWadrenal gland129.673785
ENCSR194HVUspleen127.13388799999998
ENCSR878EUTglomerular endothelial cell113.90241699999999
ENCSR094GVZsigmoid colon111.505081
ENCSR000AEPK562109.797656
ENCSR900SGEspleen107.81587900000001
ENCSR000COYskeletal muscle myoblast102.668145
ENCSR827IXSsigmoid colon86.103502
ENCSR000AEGGM1287885.876526
ENCSR630VJNtransverse colon85.66868000000001
ENCSR701TSTprostate gland81.270129
ENCSR839ZDHupper lobe of left lung73.932312
ENCSR750ETSesophagus muscularis mucosa69.744667
ENCSR729CAZomental fat pad69.07270600000001
ENCSR438YPFbreast epithelium68.128346
ENCSR510MIAesophagus squamous epithelium64.429147
ENCSR645TCGomental fat pad63.332565
ENCSR609NZMgastrocnemius medialis61.82090899999999
ENCSR822SUGairway epithelial cell59.443439
ENCSR094VRQbreast epithelium56.73660600000001
ENCSR837ZLYthoracic aorta49.606153000000006
ENCSR150QJYsubcutaneous adipose tissue49.355633000000005
ENCSR098BUFesophagus muscularis mucosa47.594489
ENCSR571RXEright atrium auricular region47.509253
ENCSR391VGUheart left ventricle46.896662
ENCSR671WMHsubcutaneous adipose tissue46.523745
ENCSR000CPJkeratinocyte44.249089
ENCSR042GYHovary43.007866
ENCSR696SMKM059J42.127586
ENCSR708VVEsubcutaneous adipose tissue40.87593
ENCSR000CPTMCF-739.984465
ENCSR158KFOomental fat pad38.750716
ENCSR796HLXtibial nerve37.70174
ENCSR067UNXHT108036.580222
ENCSR403SZNtransverse colon36.015209999999996
ENCSR620LQNesophagus muscularis mucosa35.844511
ENCSR146LBDvagina34.446373
ENCSR000CTOMCF-732.4944
ENCSR995JXEneural cell32.008337
ENCSR648OSRtibial nerve30.275059999999996
ENCSR495HDMprostate gland28.449145
ENCSR000CUJfibroblast of the aortic adventitia28.44258
ENCSR425RGZupper lobe of left lung28.289533000000002
ENCSR000CUKthoracic aorta endothelial cell27.154023
ENCSR880EGOSJSA126.217482
ENCSR108MAUsuprapubic skin25.435089
ENCSR504NIUsubcutaneous adipose tissue24.881051
ENCSR504QMKright lobe of liver24.465273
ENCSR000CPBendothelial cell of umbilical vein22.862907
ENCSR244ISQneural progenitor cell22.65191
ENCSR000AEQK56220.845396
ENCSR991HIRlower leg skin20.45166
ENCSR797BPPfibroblast of arm18.196429000000002
ENCSR434TEUbreast epithelium17.965775
ENCSR000CTPIMR-9017.215949
ENCSR841ADZovary16.319879999999998
ENCSR000AEHGM1287816.073185000000002
ENCSR000AHHheart15.91394
ENCSR000CVTGM1287815.439504999999999
ENCSR332DBSLHCN-M213.699732999999998
ENCSR000AEUliver13.679015
ENCSR680USEhair follicular keratinocyte12.798001
ENCSR919QJTH412.086963
ENCSR000COVH1-hESC12.038217
ENCSR968WKRbipolar neuron11.782653999999999
ENCSR858QELtibial nerve11.626982
ENCSR000CUEarticular chondrocyte of knee joint11.310877
ENCSR671IYCbody of pancreas10.267675
ENCSR000AEMK5629.605547
ENCSR000AAQrenal cortical epithelial cell9.522025
ENCSR182CBUesophagus muscularis mucosa9.469066
ENCSR812AKXsigmoid colon9.001236
ENCSR678TMVgastrocnemius medialis8.505528
ENCSR113HQMuterus8.476998
ENCSR226KMLright lobe of liver8.127657000000001
ENCSR000CTSSK-N-SH7.920864999999999
ENCSR801MKVadrenal gland7.82971
ENCSR450BNZPeyer's patch7.100575999999999
ENCSR272UNOtibial nerve6.9900720000000005
ENCSR653ZJFtransverse colon6.8842
ENCSR320BRRRPMI-79516.092484
ENCSR000CPMfibroblast of lung5.832587
ENCSR857WJKsigmoid colon5.747925
ENCSR611ZALK5625.163765
ENCSR770LYWK5625.124455
ENCSR000AFIstomach5.091556
ENCSR436QDUheart left ventricle4.803833999999999
ENCSR457ENPright atrium auricular region4.657775
ENCSR000AAVuterine smooth muscle cell4.651629
ENCSR424QCWK5624.16456
ENCSR000COQGM128784.100365
ENCSR856CJKK5623.894162
ENCSR296PMSstomach3.804129
ENCSR379YAEcardiac muscle cell3.748992
ENCSR938LSPGM233383.7449760000000003
ENCSR384BDVK5623.654082
ENCSR653DFZG4013.529119
ENCSR771ZZLK5623.4806980000000003
ENCSR000CPOGM128783.2354060000000002
ENCSR552NBSK5623.1330720000000003
ENCSR155EZLK5623.129796
ENCSR504VXCA3752.668887
ENCSR079IPTK5622.614545
ENCSR568YRPSJCRH302.6119369999999997
ENCSR164OCTNCI-H4602.564812
ENCSR291DJHSK-MEL-52.5589020000000002
ENCSR530BOPK5622.555431
ENCSR908ZAShepatocyte2.271209
ENCSR034VBAK5622.250866
ENCSR052FJAsmooth muscle cell2.2380560000000003
ENCSR300QFQK5622.237075
ENCSR346DZQK5622.1837310000000003
ENCSR794NUEK5622.1468849999999997
ENCSR936TEDK5622.137029
ENCSR129ROEK5622.1048459999999998
ENCSR000CPCHepG22.071935
ENCSR611LQBK5622.046463
ENCSR030GZQHepG22.036968
ENCSR192GBDK5622.0069060000000003
ENCSR815JDYHepG21.9752880000000002
ENCSR219DXZK5621.8344639999999999
ENCSR362HMXpericardium fibroblast1.8259279999999998
ENCSR000AEDGM128781.798834
ENCSR921KDSK5621.772299
ENCSR644AIMHepG21.7243009999999999
ENCSR106SZNspleen1.723962
ENCSR960MSVHepG21.7189419999999997
ENCSR032YMPK5621.705471
ENCSR778WPLK5621.697904
ENCSR688GVVK5621.695253
ENCSR222LRLK5621.669248
ENCSR113PYXK5621.5678239999999999
ENCSR597XHHHepG21.5603360000000002
ENCSR000AEFGM128781.539297
ENCSR954HAYK5621.5165
ENCSR453HKSK5621.511738
ENCSR667PLJK5621.467015
ENCSR182DAWHepG21.4648370000000002
ENCSR000CTTSK-N-SH1.443174
ENCSR927JXUHepG21.437609
ENCSR342EDGK5621.37811
ENCSR639LKSHepG21.377276
ENCSR968YWYHepG21.366107
ENCSR060KRDK5621.349976
ENCSR678WOAK5621.344533
ENCSR776SXAHepG21.333342
ENCSR542ESYHepG21.303256
ENCSR000AEZheart1.290836
ENCSR968BBQHepG21.264534
ENCSR079LMZK5621.24963
ENCSR902WSKK5621.2399870000000002
ENCSR000KYMK5621.2321010000000001
ENCSR585KOJHepG21.2241959999999998
ENCSR562CCAK5621.216867
ENCSR082UWFK5621.168037
ENCSR556FNNK5621.163676
ENCSR113HRGK5621.1425100000000001
ENCSR618IQHK5621.123684
ENCSR126ARZK5621.122287
ENCSR258VGDK5621.10664
ENCSR000AFGskin of body1.105801
ENCSR000AAIdermis blood vessel endothelial cell1.081434
ENCSR943LIBK5621.078574
ENCSR927TSPK5621.076134
ENCSR000AEOK5621.065839
ENCSR070LJOHepG21.0566870000000002
ENCSR844QNTK5621.007276
ENCSR010ZMZHepG21.002191
ENCSR580GSXA1720.993833
ENCSR003LSAHepG20.9846299999999999
ENCSR426UUGHepG20.9817379999999999
ENCSR605MFSK5620.977876
ENCSR624XHGK5620.973634
ENCSR081ESTK5620.954866
ENCSR545MEZCD4-positive helper T cell0.9490870000000001
ENCSR180XTPHepG20.946548
ENCSR330YOUHepG20.934141
ENCSR164MUKK5620.9335620000000001
ENCSR775TMWK5620.9309950000000001
ENCSR866XLIK5620.930212
ENCSR000CUBhair follicle dermal papilla cell0.9190290000000001
ENCSR788YGGK5620.8965059999999999
ENCSR843LYFK5620.892101
ENCSR880DEHHepG20.8892770000000001
ENCSR000COXmammary epithelial cell0.8577469999999999
ENCSR815CVQK5620.8486940000000001
ENCSR269HQAK5620.846885
ENCSR584JRBHepG20.8426870000000001
ENCSR419JMUK5620.831498
ENCSR119QWQK5620.782051
ENCSR721MXZK5620.780144
ENCSR809ISUK5620.777835
ENCSR782MXNHepG20.7587020000000001
ENCSR023HWIK5620.756652
ENCSR718EWLK5620.7436520000000001
ENCSR143COQK5620.7387199999999999
ENCSR254JJMDaoy0.727721
ENCSR416ZJHK5620.705973
ENCSR031RZSK5620.704492
ENCSR052IYHHepG20.69913
ENCSR000CTQIMR-900.6989569999999999
ENCSR874ZLIK5620.698205
ENCSR028YAQHepG20.696945
ENCSR000AFJtemporal lobe0.69629
ENCSR629EWXK5620.693804
ENCSR760EGMHepG20.672146
ENCSR192BPVK5620.668203
ENCSR517JHYK5620.664891
ENCSR281IUFK5620.6610739999999999
ENCSR322XVSK5620.659976
ENCSR000COOfibroblast of lung0.635141
ENCSR000CTRSK-N-SH0.616729
ENCSR067GHDHepG20.6143609999999999
ENCSR090UMIHepG20.613839
ENCSR491FOCHepG20.610109
ENCSR511BNYK5620.6035020000000001
ENCSR967QNTK5620.6013890000000001
ENCSR167JPYHepG20.594341
ENCSR675KPRK5620.593549
ENCSR325OOMK5620.582519
ENCSR368ZRPK5620.557573
ENCSR535YPKK5620.5480119999999999
ENCSR815UVLmammary microvascular endothelial cell0.545261
ENCSR334BTAK5620.538868
ENCSR000CUNmammary epithelial cell0.538208
ENCSR092WKGK5620.525964
ENCSR586SYAbody of pancreas0.5217
ENCSR713OLVHepG20.519998
ENCSR528ASXK5620.516659
ENCSR712CSNK5620.507061
ENCSR000AFAmetanephros0.502373
ENCSR777EDLK5620.499701
ENCSR082YGIHepG20.49122899999999997
ENCSR386YEVK5620.488755
ENCSR490DYIHepG20.477587
ENCSR385TMYHepG20.47143199999999996
ENCSR599PXDHepG20.471304
ENCSR792CBMK5620.46774399999999994
ENCSR850PWMK5620.462905
ENCSR000AEEGM128780.45391099999999995
ENCSR264TUEHepG20.452629
ENCSR837QDNHepG20.45050100000000004
ENCSR210KJBK5620.443892
ENCSR154OBAK5620.43542
ENCSR152IWTK5620.43281400000000003
ENCSR813NZPK5620.432123
ENCSR245BNJK5620.41200000000000003
ENCSR577XBWK5620.41118999999999994
ENCSR017PRSHepG20.405976
ENCSR110HAAHepG20.4053
ENCSR372UWVHepG20.404649
ENCSR454KYRK5620.39951
ENCSR606QIXK5620.39786900000000003
ENCSR851KEXHepG20.393005
ENCSR164TLBK5620.392277
ENCSR780YFFK5620.391288
ENCSR124KCFHepG20.390756
ENCSR494UDFK5620.389263
ENCSR116QBUHepG20.38715700000000003
ENCSR000AFKthyroid gland0.380859
ENCSR783LUAK5620.377379
ENCSR000CONA5490.368929
ENCSR104ABFHepG20.36545500000000003
ENCSR774BXVK5620.36417
ENCSR389HFUHepG20.360722
ENCSR076PMZK5620.36045
ENCSR014VQSK5620.356045
ENCSR470PRVK5620.35583899999999996
ENCSR944FLLCD8-positive alpha-beta T cell0.353194
ENCSR000CPAendothelial cell of umbilical vein0.33368600000000004
ENCSR000COZendothelial cell of umbilical vein0.33314699999999997
ENCSR188IPOK5620.303008
ENCSR198TKAmesangial cell0.30251100000000003
ENCSR560RSZK5620.302029
ENCSR169QQWK5620.292405
ENCSR000CUIskeletal muscle satellite cell0.286504
ENCSR678MVEK5620.277317
ENCSR000AEXdiencephalon0.274095
ENCSR904BCZK5620.27026
ENCSR936VPPK5620.268422
ENCSR823WTAK5620.267162
ENCSR667JTAMCF-70.266261
ENCSR422JMSHepG20.259069
ENCSR594DNWHepG20.252827
ENCSR366FFVHepG20.243736
ENCSR896CFVHepG20.230267
ENCSR137HKSK5620.22956300000000002
ENCSR891AXFK5620.22428
ENCSR000CPLkeratinocyte0.223232
ENCSR000COUH1-hESC0.21434699999999998
ENCSR767LLPHepG20.211662
ENCSR627NVUK5620.206711
ENCSR222ABKK5620.20481799999999997
ENCSR000AFEparietal lobe0.19664500000000001
ENCSR345VVZK5620.19330999999999998
ENCSR853WOMstomach0.169186
ENCSR336DFSK5620.164399
ENCSR000CQKHepG20.156403
ENCSR139BIJK5620.14184000000000002
ENCSR385UPQK5620.13913499999999998
ENCSR109IQOK5620.13476
ENCSR000CTLA5490.127659
ENCSR000CPFHepG20.12525899999999998
ENCSR558XNAK5620.11933699999999998
ENCSR244SIOK5620.11595899999999999
ENCSR373KOFK5620.111233
ENCSR984CLJK5620.108347
ENCSR897KTOepithelial cell of alveolus of lung0.09844800000000001
ENCSR395FYFK5620.08304199999999999
ENCSR849STRK5620.074316
ENCSR000CPHK5620.07359600000000001
ENCSR482VRIsmall intestine0.07070800000000001
ENCSR376FGRHepG20.066741
ENCSR620PUPK5620.06306
ENCSR000AFFskeletal muscle tissue0.06002999999999999
ENCSR746NIMK5620.059372
ENCSR056QEWK5620.05284199999999999
ENCSR000AARtracheal epithelial cell0.052025999999999996
ENCSR977XUXneural stem progenitor cell0.045457
ENCSR231DXJK5620.044192
ENCSR208GPEK5620.043815
ENCSR572EETneural stem progenitor cell0.026906
ENCSR620HAAHepG20.024381
ENCSR000AAUsmooth muscle cell of the umbilical artery0.021577000000000002
ENCSR191VWKK5620.020631
ENCSR000CURmelanocyte of skin0.018345
ENCSR961WVLK5620.00041500000000000006
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FASTA

>ENST00000620902
GGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAGATAGAGATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATATGAAGACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAATAGAG

Disease and interactions

DiseasePMIDDysfunction_typeData source
gallbladder cancer27420766expressionPMC6372806
gastric cancer27887846expressionPMC6372806
renal cell carcinoma25480417expressionPMC6372806
gastric cancer28942451regulatedPMC6372806
endometrial cancer27693631expressionPMC6372806
esophageal cancer25613496regulatedPMC6372806
osteosarcoma25431257regulatedPMC6372806
25773124PMC6372806
hepatocellular carcinoma28469957expressionPMC6372806
osteosarcoma28346809expressionPMC6372806
renal cell carcinoma25600645expressionPMC6372806
28535533expressionPMC6372806
bladder cancer24449823expressionPMC6372806
gastric cancer27259812expressionPMC6372806
breast cancer28915533expressionPMC6372806
breast cancer26917489regulatedPMC6372806
26335021PMC6372806
gastric cancer25280565expressionPMC6372806
hepatocellular carcinoma21678027expressionPMC6372806
colorectal cancer25025966expressionPMC6372806
cholangiocarcinoma28059437expressionPMC6372806
multiple myeloma28295550expressionPMC6372806
tongue cancer28260102expressionPMC6372806
glioma26619802expressionPMC6372806
cervical cancer26242259expressionPMC6372806
colorectal cancer25446987expressionPMC6372806
mantle cell lymphoma27998273expressionPMC6372806
cervical cancer26798987expressionPMC6372806
colorectal cancer28069878expressionPMC6372806
thyroid cancer27470543expressionPMC6372806
bladder cancer28648755expressionPMC6372806
oral squamous cell carcinoma28926115expressionPMC6372806
hepatocellular carcinoma28543721expressionPMC6372806
prostate cancer23845456expressionPMC6372806
gastric cancer28276823expressionPMC6372806
bladder cancer23153939expressionPMC6372806
non-small-cell lung cancer25217850expressionPMC6372806
renal cell carcinoma27655020expressionPMC6372806
choriocarcinoma29096355expressionPMC6372806
oral squamous cell carcinoma26522444expressionPMC6372806
breast cancer27197265expressionPMC6372806
lung cancer23243023expressionPMC6372806
hypertension28056547expressionPMC6372806
hepatocellular carcinoma24468535expressionPMC6372806
pancreatic cancer25269958expressionPMC6372806
osteosarcoma26575981expressionPMC6372806
breast cancer26676637expressionPMC6372806
thyroid cancer28543663expressionPMC6372806
hepatocellular carcinoma28720061expressionPMC6372806
multiple myeloma25187517expressionPMC6372806
tongue cancer27586393expressionPMC6372806
gastric cancer28268166expressionPMC6372806
calcific aortic valve disease28522163expressionPMC6372806
esophageal cancer26493997expressionPMC6372806
pancreatic cancer28701723expressionPMC6372806
osteosarcoma28098894expressionPMC6372806
liver fibrosis26435214expressionPMC6372806
endometrial cancer25085246regulatedPMC6372806
nasopharyngeal carcinoma27584791regulatedPMC6372806
esophageal cancer27935117expressionPMC6372806
colorectal cancer29436635expressionPMC6372806
lung cancer28615056regulatedPMC6372806
esophageal cancer27470544expressionPMC6372806
glioma26938295expressionPMC6372806
osteoarthritis28590075expressionPMC6372806
hepatocellular carcinoma28722813expressionPMC6372806
29051139expressionPMC6372806
gallbladder cancer29058818expressionPMC6372806
retinoblastoma29073720expressionPMC6372806
diabetes mellitus29110299expressionPMC6372806
22487937expressionPMC6372806
multiple myeloma24583225expressionPMC6372806
Parkinson's disease27021022expressionPMC6372806
glioma29202181expressionPMC6372806
osteosarcoma29204769expressionPMC6372806
multiple myeloma29214735expressionPMC6372806
non-small-cell lung cancer29215698expressionPMC6372806
pancreatic cancer29215734expressionPMC6372806
colon cancer29226325expressionPMC6372806
29227193expressionPMC6372806
29258822expressionPMC6372806
29274336expressionPMC6372806
osteosarcoma29290771expressionPMC6372806
esophageal squamous cell carcinoma25538231regulationPMC5753334
gallbladder cancer24658096regulationPMC5753334
colon cancer25546229regulationPMC5753334
colorectal cancer25031737regulationPMC5753334
bladder cancer24373479regulationPMC5753334
breast cancer22492512regulationPMC5753334
breast cancer22996375regulationPMC5753334
breast cancer24499465regulationPMC5753334
cancer23463798regulationPMC5753334
cancer24757675regulationPMC5753334
tumor24721780regulationPMC5753334
prostate cancer23726266PMC5753334
cervical cancer24932303PMC5753334
pancreatic ductal adenocarcinoma24815433PMC5753334
nasopharyngeal carcinoma23688988PMC5753334
bladder cancer22722759PMC5753334
gastric cancer24857172PMC5753334
colorectal cancer24244343PMC5753334
melanoma24892958PMC5753334
breast cancer24525122PMC5753334
neuroblastoma24742640PMC5753334
prostate cancer22349460PMC5753334
osteosarcoma17660802PMC5753334
non-small cell lung cancer24313945PMC5753334
multiple myeloma25369863PMC5753334
breast cancer26918449PMC5753334
breast cancer 26926567PMC5753334
gastric cancer 26871474PMC5753334
acute myocardial infarction25035150PMC5753334
diabetes mellitus25356875PMC5753334
glioblastoma25772239PMC5753334
ovarian cancer24379988PMC5753334
esophageal squamous cell carcinoma27015363PMC5753334
colorectal cancer21503572PMC5753334
lung cancer22491206PMC5753334
hepatocelluar carcinoma22493738mutationPMC5753334
paraspeckle disintegration19188602mutationPMC5753334
renal cancer26461224interactionPMC5753334
nasopharyngeal carcinoma26482776interactionPMC5753334
cervical cancer26311052interactionPMC5753334
non-small cell lung cancer26265046interactionPMC5753334
lung cancer26415832interactionPMC5753334
"hepatocellular carcinoma
prostate cancer26516927interactionPMC5753334
cervical cancer20213048InteractionPMC5753334
non-small-cell lung cancer25036876interactionPMC5753334
breast cancer26191181interactionPMC5753334
pre-eclampsia26722461interactionPMC5753334
breast cancer26275461interactionPMC5753334
glioma26649728interactionPMC5753334
lung adenocarcinoma20937273interactionPMC5753334
cervical cancer26400521expressionPMC5753334
proliferative vitreoretinopathy26241674expressionPMC5753334
gastric cancer26096073expressionPMC5753334
non-small cell lung cancer26131129expressionPMC5753334
non-small cell lung cancer22088988expressionPMC5753334
triple-negative breast cancer25996380expressionPMC5753334
hepatocelluar carcinoma16878148expressionPMC5753334
pancreatic cancer25811929expressionPMC5753334
pituitary adenoma24469926expressionPMC5753334
pancreatic cancer25481511expressionPMC5753334
glioma25613066expressionPMC5753334
non-small cell lung cancer12970751expressionPMC5753334
esophageal squamous cell carcinoma26406400expressionPMC5753334
laryngeal squamous cell carcinoma25257554expressionPMC5753334
endometrial stromal sarcoma16441420expressionPMC5753334
bladder cancer24006935expressionPMC5753334
cancer20711585expressionPMC5753334
cancer20864030expressionPMC5753334
cancer23660942expressionPMC5753334
decreased myogenesis23485710expressionPMC5753334
diabetes mellitus24436191expressionPMC5753334
hepatocelluar carcinoma17006932expressionPMC5753334
hepatocelluar carcinoma24183851expressionPMC5753334
lung adenocarcinoma19690017expressionPMC5753334
lung cancer24667321expressionPMC5753334
non-small cell lung cancer21550244expressionPMC5753334
non-small cell lung cancer21903344expressionPMC5753334
non-small cell lung cancer22817756expressionPMC5753334
osteosarcoma20951849expressionPMC5753334
small cell lung cancer22928560expressionPMC5753334
papillary thyroid carcinoma25997963expressionPMC5753334
neuroblastoma20149803expressionPMC5753334
lung cancer26137228expressionPMC5753334
laryngeal squamous cell carcinoma24817925expressionPMC5753334
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Level of interactionTypeTargetPMIDData source
DNA-TFregulationCREB20149803PMC5753334
RNA-ProteinbindingSR20797886PMC5753334
RNA-ProteinbindingSR proteins 20797886PMC5753334
RNA-ProteinregulationSR protein family20864030PMC5753334
RNA-ProteinregulationSRSF120864030PMC5753334
RNA-Proteinbindingp54nrb21444682PMC5753334
RNA-ProteinbindingPSF21444682PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
RNA-ProteinregulationRNPS122355166PMC5753334
RNA-ProteinregulationSRm16022355166PMC5753334
RNA-ProteinregulationIBP16022355166PMC5753334
RNA-Proteinregulationpre-mRNA splicing factors23698766PMC5753334
RNA-DNAregulationBcl-225036876PMC5753334
RNA-DNAbindingSp1 and LTBP3 promoter25187517PMC5753334
regulationCisplatin and paclitaxel25257554PMC5753334
RNA-RNAregulationSiRNA25280565PMC5753334
RNA-ProteinregulationPI3K/AKT signaling pathway25431257PMC5753334
RNA-RNAregulationmiR-101 and miR-21725538231PMC5753334
RNA-ProteinregulationCCL525546229PMC5753334
RNA-ProteinregulationATM-CHK2 pathway25613496PMC5753334
RNA-ProteinregulationRANKL25817340PMC5753334
regulationPI3K-AKT pathway26191181PMC5753334
RNA-RNAregulationmiRNA-12426242259PMC5753334
RNA-ProteinbindingTDP-4326265046PMC5753334
RNA-RNAregulationhsa-miR-126275461PMC5753334
RNA-RNAregulationmiR-14526311052PMC5753334
DNA-ProteinregulationSp1/326352013PMC5753334
RNA-ProteinregulationEZH2 (enhancer of zeste homolog 2) and H3K27me326415832PMC5753334
DNA-RNAregulationmiR-21726415832PMC5753334
RNA-RNAbindingmiR-200s26461224PMC5753334
RNA-RNAregulationmiR-126482776PMC5753334
RNA-ProteinbindingEZH226516927PMC5753334
RNA-ProteinregulationN-cadherin, Vimentin, E-cadherin26522444PMC5753334
RNA-ProteinregulationZO-1, occludin and claudin-526619802PMC5753334
RNA-RNAregulationmiR-14026619802PMC5753334
regulationERK/MAPK signaling26649728PMC5753334
RNA-ProteinregulationSox2 and Nestin26649728PMC5753334
RNA-RNAregulationHsa-miR-126676637PMC5753334
RNA-Proteinregulationpro-apoptotic proteins including cleaved caspase-3, cleaved caspase-9 and cleaved poly (ADP-ribose) 26722461PMC5753334
RNA-DNAregulationPCDH1026871474PMC5753334
RNA-ProteinbindingEZH226871474PMC5753334
RNA-RNAbindingmiR-124 26918449PMC5753334
RNA-DNAregulationcyclin-dependent kinase 4 (CDK4)26918449PMC5753334
RNA-DNAregulationcdc4226926567PMC5753334
RNA-RNAbindingmiR-1 26926567PMC5753334

Conservation

Conserved in: 10 species
Not found in: 1 species
Most distant counterpart in: Marmoset
Conserved species: Chimp, Bonobo, Gorilla, Orangutan, Rhesus, Crab-eating macaque, Atys, Baboon, Green monkey, Marmoset
Not found in: Lemur
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Human

ENST00000620902

Counterpart found

Chimp

TCONS_00020732

Exonic Identity 97%

Locus Identity 98%
Counterpart found

Bonobo

TCONS_00022393

Exonic Identity 97%

Locus Identity 97%
Counterpart found

Gorilla

TCONS_00005532

Exonic Identity 0%

Locus Identity 0%
Counterpart found

Orangutan

TCONS_00007273

Exonic Identity 0%

Locus Identity 0%
Counterpart found

Rhesus

TCONS_00069425

Exonic Identity 0%

Locus Identity 0%
Counterpart found

MacacaFascicularis

TCONS_00108125

Exonic Identity 0%

Locus Identity 92%
Counterpart found

Atys

TCONS_00089607

Exonic Identity 0%

Locus Identity 92%
Counterpart found

Baboon

TCONS_00052525

Exonic Identity 0%

Locus Identity 0%
Counterpart found

GreenMonkey

TCONS_00003650

Exonic Identity 56%

Locus Identity 93%
Counterpart found

Marmoset

TCONS_00031137

Exonic Identity 0%

Locus Identity 0%
Counterpart not found

Lemur

ENST00000620902

Human non-coding transcript

Open the region of interest in the ENSEMBL Browser

ENSEMBL Browser

Check the reference ENSEMBL
transcript ID

ENSEMBL Transcript

Open the region of interest in the UCSC Genome Browser

UCSC Genome Browser