MSTRG.22375.52

Human non-coding transcript

Reference

Relation to reference Generic exonic overlap with a reference transcript
Reference ENSEMBL ID ENST00000619449
Reference alias MALAT1
Biotype of reference transcript lincRNA
Reference Gene ID ENSG00000251562
Responsive image

Isoforms

ENSG00000251562 MSTRG.22374.97 MSTRG.22375.13 MSTRG.22375.14 MSTRG.22375.19 ENST00000544868 MSTRG.22374.32 MSTRG.22374.15 MSTRG.22374.103 MSTRG.22374.72 MSTRG.22374.13 MSTRG.22374.55 MSTRG.22374.56 MSTRG.22374.50 MSTRG.22374.52 MSTRG.22374.59 MSTRG.22374.38 ENST00000618925 MSTRG.22375.87 MSTRG.22375.81 MSTRG.22375.62 MSTRG.22375.69 MSTRG.22375.44 MSTRG.22375.49 ENST00000617791 MSTRG.22375.28 MSTRG.22375.22 MSTRG.22375.20 MSTRG.22375.21 ENST00000619449 ENST00000616691 MSTRG.22374.83 ENST00000610851 MSTRG.22374.138 ENST00000618132 MSTRG.22374.116 MSTRG.22374.117 MSTRG.22374.119 MSTRG.22374.69 MSTRG.22375.97 MSTRG.22374.12 MSTRG.22374.144 ENST00000616527 ENST00000620902 MSTRG.22375.2 MSTRG.22375.56 MSTRG.22375.52 ENST00000508832 MSTRG.22375.34 MSTRG.22374.6 MSTRG.22374.8 MSTRG.22374.9
Responsive image

lncRNA

Transcript ID MSTRG.22375.52
Chromosome 11
Start 65499042
Stop 65503609
Strand +
Exons 4
Length 4077 nt
Protein coding potential Low

Expession

Sample ID Sample type Expression (TPM)
ENCSR000CQPSK-N-SH214.74618999999998
ENCSR000CPXfibroblast of lung98.03372900000001
ENCSR000CPSK56263.535658
ENCSR000CQCA54952.086892999999996
ENCSR000CQDforeskin fibroblast42.324812
ENCSR000AEQK56231.377152000000002
ENCSR000AEPK56228.767224
ENCSR000AEGGM1287821.464093
ENCSR000CQJHeLa-S318.708060999999997
ENCSR000AEHGM1287817.2569
ENCSR000CTMA54916.796163
ENCSR450BNZPeyer's patch15.026214999999999
ENCSR000CTPIMR-9013.729247
ENCSR000CPYK56211.784792999999999
ENCSR047QHXK56211.550071
ENCSR126ARZK56210.900276
ENCSR192BPVK56210.893028
ENCSR077BPRK56210.058512
ENCSR866XLIK5629.847255
ENCSR113PYXK5629.500194
ENCSR000CPBendothelial cell of umbilical vein9.089736
ENCSR192GBDK5629.066208999999999
ENCSR000CPDHepG28.619492999999999
ENCSR678WOAK5628.379014
ENCSR403SZNtransverse colon7.8206039999999994
ENCSR194HVUspleen7.791453
ENCSR952QDQK5627.65757
ENCSR000CPQHeLa-S37.469993
ENCSR802HPMPeyer's patch7.320749
ENCSR752UNJstomach6.855149000000001
ENCSR556FNNK5626.2016800000000005
ENCSR544SAUPeyer's patch6.191949
ENCSR244SIOK5626.124899
ENCSR701TSTprostate gland6.042917
ENCSR164MUKK5625.912897
ENCSR671WMHsubcutaneous adipose tissue5.903771
ENCSR000CTTSK-N-SH5.872433999999999
ENCSR000CPCHepG25.808338
ENCSR082UWFK5625.613676
ENCSR900SGEspleen5.396182
ENCSR034VBAK5625.372729
ENCSR000CQGendothelial cell of umbilical vein5.3322080000000005
ENCSR000CPJkeratinocyte5.287512
ENCSR346DZQK5625.191946
ENCSR954HAYK5624.93645
ENCSR450ENKsuprapubic skin4.7456190000000005
ENCSR827IXSsigmoid colon4.728075
ENCSR800WIYtransverse colon4.513028
ENCSR419JMUK5624.195473000000001
ENCSR775TMWK5624.144071
ENCSR967QNTK5624.12007
ENCSR116QBUHepG24.110856
ENCSR424QCWK5623.962673
ENCSR100SILforeskin keratinocyte3.8810620000000005
ENCSR471RUKstomach3.853264
ENCSR330UMQspleen3.663097
ENCSR150QJYsubcutaneous adipose tissue3.616775
ENCSR406SAWupper lobe of left lung3.5041599999999997
ENCSR555LCEK5623.1642959999999998
ENCSR688GVVK5623.138219
ENCSR671IYCbody of pancreas3.008172
ENCSR552NBSK5622.885647
ENCSR000CPOGM128782.8772599999999997
ENCSR219DXZK5622.838286
ENCSR384BDVK5622.6770560000000003
ENCSR425RGZupper lobe of left lung2.6528240000000003
ENCSR689ZJCHepG22.610819
ENCSR551NIIlower leg skin2.529189
ENCSR385TMYHepG22.5213520000000003
ENCSR000CPGK5622.43742
ENCSR000COPforeskin fibroblast2.413561
ENCSR129ROEK5622.323517
ENCSR808FBRHepG22.265482
ENCSR104ABFHepG22.10613
ENCSR635BOOHepG22.003203
ENCSR653ZJFtransverse colon1.983932
ENCSR296PMSstomach1.868653
ENCSR000CQKHepG21.8380029999999998
ENCSR801MKVadrenal gland1.791525
ENCSR146LBDvagina1.7841650000000002
ENCSR453HKSK5621.752177
ENCSR000CQBMCF-71.7511720000000002
ENCSR000CTSSK-N-SH1.634531
ENCSR839ZDHupper lobe of left lung1.596744
ENCSR000CTOMCF-71.586959
ENCSR719PXCascending aorta1.569424
ENCSR000CPEHepG21.515918
ENCSR713OLVHepG21.459324
ENCSR760EGMHepG21.4543059999999999
ENCSR379YAEcardiac muscle cell1.4070799999999999
ENCSR778WPLK5621.273339
ENCSR000CPLkeratinocyte1.193024
ENCSR106SZNspleen1.179163
ENCSR000AFJtemporal lobe1.159043
ENCSR644AIMHepG21.1448049999999999
ENCSR426UUGHepG21.132196
ENCSR624XHGK5621.119456
ENCSR000CPNSK-N-SH1.112778
ENCSR000COVH1-hESC1.094991
ENCSR000CTLA5491.023466
ENCSR767LLPHepG21.020053
ENCSR613SLAforeskin keratinocyte0.96339
ENCSR000CPZK5620.945959
ENCSR782MXNHepG20.928509
ENCSR000COSGM128780.915716
ENCSR708VVEsubcutaneous adipose tissue0.835875
ENCSR598GKQHepG20.829406
ENCSR457WBKHepG20.78242
ENCSR032YMPK5620.7679729999999999
ENCSR000CTQIMR-900.760965
ENCSR794NUEK5620.727737
ENCSR052FJAsmooth muscle cell0.663673
ENCSR081ESTK5620.640125
ENCSR485WBRgastroesophageal sphincter0.588662
ENCSR000AELK5620.588017
ENCSR853WOMstomach0.586055
ENCSR504NIUsubcutaneous adipose tissue0.568253
ENCSR376FGRHepG20.551442
ENCSR788YGGK5620.551221
ENCSR850PWMK5620.543215
ENCSR080HPTomental fat pad0.534064
ENCSR712CSNK5620.530296
ENCSR721MXZK5620.490583
ENCSR857WJKsigmoid colon0.484137
ENCSR463JBRCD4-positive helper T cell0.47130500000000003
ENCSR000CQHendothelial cell of umbilical vein0.46664300000000003
ENCSR481YXDK5620.44269899999999995
ENCSR527QNCHepG20.434911
ENCSR630VJNtransverse colon0.431464
ENCSR016XPBHepG20.422104
ENCSR000CPHK5620.403043
ENCSR504VXCA3750.398681
ENCSR661HELK5620.393336
ENCSR482VRIsmall intestine0.391334
ENCSR921KDSK5620.38614499999999996
ENCSR119QWQK5620.378353
ENCSR264TUEHepG20.376197
ENCSR000AFHspinal cord0.36548400000000003
ENCSR000CPPHeLa-S30.363005
ENCSR000COQGM128780.337237
ENCSR351CNNK5620.334859
ENCSR011BBSHepG20.33132
ENCSR777EDLK5620.329484
ENCSR586SYAbody of pancreas0.324408
ENCSR017PRSHepG20.319776
ENCSR968WKRbipolar neuron0.307734
ENCSR000COOfibroblast of lung0.30596100000000004
ENCSR963RLKK5620.30525399999999997
ENCSR783LUAK5620.30376
ENCSR968YWYHepG20.289677
ENCSR861QKFCD8-positive alpha-beta T cell0.288159
ENCSR676EKUHepG20.28625300000000004
ENCSR003LSAHepG20.27363000000000004
ENCSR389HFUHepG20.26132
ENCSR792CBMK5620.259062
ENCSR546MBHK5620.257612
ENCSR052IYHHepG20.252813
ENCSR000AFNuterus0.249894
ENCSR222CSFHepG20.24439899999999998
ENCSR000CTRSK-N-SH0.242274
ENCSR000AEUliver0.241256
ENCSR843LYFK5620.238608
ENCSR000COXmammary epithelial cell0.229253
ENCSR902WSKK5620.22456900000000002
ENCSR694LKYK5620.22281900000000002
ENCSR991HIRlower leg skin0.218094
ENCSR000CPIkeratinocyte0.21770799999999998
ENCSR000CUJfibroblast of the aortic adventitia0.217677
ENCSR645TCGomental fat pad0.213588
ENCSR936VPPK5620.21231399999999997
ENCSR081QQHHepG20.212269
ENCSR728BOLHepG20.211959
ENCSR272UNOtibial nerve0.19855599999999998
ENCSR300QFQK5620.197988
ENCSR997HCQHepG20.19386099999999998
ENCSR292TAPneural cell0.191781
ENCSR164TLBK5620.191405
ENCSR648QFYK5620.188844
ENCSR570CWHHepG20.184834
ENCSR234YMWK5620.18170899999999998
ENCSR000COTH1-hESC0.17036500000000002
ENCSR745WVZK5620.170266
ENCSR898NWEK5620.170062
ENCSR071ZLMuterus0.169349
ENCSR000AEEGM128780.166748
ENCSR620PUPK5620.163215
ENCSR094VRQbreast epithelium0.160797
ENCSR000CTKIMR-900.159672
ENCSR545MEZCD4-positive helper T cell0.155664
ENCSR912EHPHepG20.15501800000000002
ENCSR944FLLCD8-positive alpha-beta T cell0.15171099999999998
ENCSR678MVEK5620.15093199999999998
ENCSR149DMYK5620.150445
ENCSR608IAIK5620.148281
ENCSR321PGVlower leg skin0.146467
ENCSR129RWDK5620.144567
ENCSR344XIDK5620.133633
ENCSR000AHHheart0.132855
ENCSR560AYQK5620.132771
ENCSR000AEZheart0.128116
ENCSR964YTWHepG20.127406
ENCSR310FISMCF-70.12403399999999999
ENCSR718EWLK5620.122484
ENCSR627NVUK5620.11856199999999999
ENCSR113HQMuterus0.11793599999999999
ENCSR367AIVforeskin keratinocyte0.10856400000000001
ENCSR529JNJK5620.10703599999999999
ENCSR894WMQmyocyte0.095444
ENCSR312HJYK5620.094738
ENCSR000CPTMCF-70.093591
ENCSR504QMKright lobe of liver0.092022
ENCSR841ADZovary0.089326
ENCSR000CPRHeLa-S30.087146
ENCSR109IQOK5620.084094
ENCSR334HNJK5620.083124
ENCSR000CTXpericyte cell0.082866
ENCSR611ZALK5620.081887
ENCSR035SKVgastroesophageal sphincter0.080537
ENCSR000AEVurinary bladder0.077386
ENCSR158KFOomental fat pad0.072424
ENCSR667JTAMCF-70.072171
ENCSR000CTZmesenchymal stem cell of adipose0.065273
ENCSR000AAAaortic smooth muscle cell0.062922
ENCSR000CVTGM128780.061012000000000004
ENCSR858QELtibial nerve0.059557000000000006
ENCSR000AEDGM128780.058987
ENCSR000CUDmesenchymal stem cell of the bone marrow0.057409
ENCSR908ZAShepatocyte0.055839
ENCSR000AASsmooth muscle cell of trachea0.055626
ENCSR332DBSLHCN-M20.055563
ENCSR094GVZsigmoid colon0.050552
ENCSR995JXEneural cell0.049658
ENCSR357XTUnatural killer cell0.048931
ENCSR000AFIstomach0.048842
ENCSR000CQMK5620.047764
ENCSR474TRGesophagus squamous epithelium0.045027
ENCSR110BDYcardiac atrium fibroblast0.044638
ENCSR812AKXsigmoid colon0.044220999999999996
ENCSR434TEUbreast epithelium0.043381
ENCSR067UNXHT10800.043047
ENCSR648OSRtibial nerve0.040447000000000004
ENCSR000CQIHeLa-S30.040042
ENCSR000AEOK5620.039365
ENCSR959LTTforeskin keratinocyte0.038645
ENCSR438YPFbreast epithelium0.036808
ENCSR880EGOSJSA10.036549
ENCSR000AFGskin of body0.03584
ENCSR000CUBhair follicle dermal papilla cell0.035823
ENCSR001HHKOCI-LY70.031722
ENCSR244ISQneural progenitor cell0.029744
ENCSR000CQAK5620.029639
ENCSR034RPUforeskin keratinocyte0.027136
ENCSR255NYQSK-N-DZ0.026969
ENCSR555BCPadrenal gland0.025019
ENCSR000CPMfibroblast of lung0.023224
ENCSR372UWVHepG20.020575
ENCSR374NMJHepG20.020051
ENCSR000CUEarticular chondrocyte of knee joint0.019643
ENCSR000AANsmooth muscle cell of the pulmonary artery0.017682
ENCSR995JMSHepG20.017516999999999998
ENCSR000CPKkeratinocyte0.016531999999999998
ENCSR000AEXdiencephalon0.014584
ENCSR267RHPK5620.013575
ENCSR373BDGkidney epithelial cell0.01258
ENCSR822SUGairway epithelial cell0.012367
ENCSR572EETneural stem progenitor cell0.011856
ENCSR000AAVuterine smooth muscle cell0.011432
ENCSR977XUXneural stem progenitor cell0.011413
ENCSR000CUNmammary epithelial cell0.010925
ENCSR862RGXsuprapubic skin0.010655
ENCSR700BEWmesendoderm0.009794
ENCSR000AEYfrontal cortex0.009595999999999999
ENCSR815UVLmammary microvascular endothelial cell0.009138
ENCSR000CUKthoracic aorta endothelial cell0.008239
ENCSR000AAQrenal cortical epithelial cell0.007807
ENCSR444WHQskeletal muscle myoblast0.0061070000000000004
ENCSR000CUOmesenchymal stem cell of Wharton's jelly0.005777
ENCSR040WAKHepG20.005736
ENCSR797BPPfibroblast of arm0.004482
ENCSR000CUHfibroblast of dermis0.004058
ENCSR000AALnasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa0.0021850000000000003
ENCSR000CUFosteoblast0.001808
ENCSR518JXYHepG20.00164
ENCSR594DNWHepG20.000653
ENCSR000COKK5620.000515
ENCSR530BOPK5620.000412
ENCSR701GSVHepG20.000106
ENCSR896MMUHepG29.2e-05
ENCSR744PAQHepG27.3e-05
ENCSR511BNYK5626.4e-05
ENCSR000CQNkeratinocyte6.2e-05
ENCSR746NIMK5625.2000000000000004e-05
ENCSR925SYZHepG27.000000000000001e-06
ENCSR274KWAHepG26e-06
ENCSR490DYIHepG25e-06
ENCSR355OQCHepG23e-06
ENCSR060IWWHepG23e-06
ENCSR110HAAHepG22e-06
ENCSR769GESHepG21e-06
ENCSR844QNTK5621e-06
Responsive image

FASTA

>MSTRG.22375.52
GGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAGATAGAGATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATATGAAGACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGGTTGAGATGAAGCTTCTTCATGGAGTAAAAAATGTATTTAAAAGAAAATTGAGAGAAAGGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAATAGAGAAGATAGGGAAATTAGAAGATAAAAACATACTTTTAGAAGAAAAAAGATAAATTTAAACCTGAAAAGTAGGAAGCAGAAGAAAAAAGACAAGCTAGGAAACAAAAAGCTAAGGGCAAAATGTACAAACTTAGAAGAAAATTGGAAGATAGAAACAAGATAGAAAATGAAAATATTGTCAAGAGTTTCAGATAGAAAATGAAAAACAAGCTAAGACAAGTATTGGAGAAGTATAGAAGATAGAAAAATATAAAGCCAAAAATTGGATAAAATAGCACTGAAAAAATGAGGAAATTATTGGTAACCAATTTATTTTAAAAGCCCATCAATTTAATTTCTGGTGGTGCAGAAGTTAGAAGGGGAAGTTGGTTAAAAATCACATCAAAAAGCTACTAAAAGGACTGGTGTAATTTAAAAAAAACTAAGGCAGAAGGCTTTTGGAAGAGTTAGAAGAATTTGGAAGGCCTTAAATATAGTAGCTTAGTTTGAAAAATGTGAAGGACTTTCGTAACGGAAGTAATTCAAGATCAAGAGTAATTACCAACTTAATGTTTTTGCATTGGACTTTGAGTTAAGATTATTTTTTAAATCCTGAGGACTAGCATTAATTGACAGCTGACCCAGGTGCTACACAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAAGCTAGGAAGAAGGAAGGAGCGCTAACGATTTGGTGGTGAAGCTAGGAAAAAGGATTCCAGGAAGGAGCGAGTGCAATTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAGTGGTTGGTAAAAATCCGTGAGGTCGGCAATATGTTGTTTTTCTGGAACTTACTTATGGTAACCTTTTATTTATTTTCTAATATAATGGGGGAGTTTCGTACTGAGGTGTAAAGGGATTTATATGGGGACGTAGGCCGATTTCCGGGTGTTGTAGGTTTCTCTTTTTCAGGCTTATACTCATGAATCTTGTCTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATAGTAGATGGTCTGTCTAGAATCCTAAAGGCAAATGACTCAAGGTGTAACAGAAAACAAGAAAATCCAATATCAGGATAATCAGACCACCACAGGTTTACAGTTTATAGAAACTAGAGCAGTTCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTAGTTACTCTTTTTTCCCCCCACCCCCTTAATCAGACTTTAAAAGTGCTTAACCCCTTAAACTTGTTATTTTTTACTTGAAGCATTTTGGGATGGTCTTAACAGGGAAGAGAGAGGGTGGGGGAGAAAATGTTTTTTTCTAAGATTTTCCACAGATGCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAGTGTACCGCTGTGCTGTTGGCACGAACACCTTCAGGGACTGGAGCTGCTTTTATCCTTGGAAGAGTATTCCCAGTTGAAGCTGAAAAGTACAGCACAGTGCAGCTTTGGTTCATATTCAGTCATCTCAGGAGAACTTCAGAAGAGCTTGAGTAGGCCAAATGTTGAAGTTAAGTTTTCCAATAATGTGACTTCTTAAAAGTTTTATTAAAGGGGAGGGGCAAATATTGGCAATTAGTTGGCAGTGGCCTGTTACGGTTGGGATTGGTGGGGTGGGTTTAGGTAATTGTTTAGTTTATGATTGCAGATAAACTCATGCCAGAGAACTTAAAGTCTTAGAATGGAAAAAGTAAAGAAATATCAACTTCCAAGTTGGCAAGTAACTCCCAATGATTTAGTTTTTTTCCCCCCAGTTTGAATTGGGAAGCTGGGGGAAGTTAAATATGAGCCACTGGGTGTACCAGTGCATTAATTTGGGCAAGGAAAGTGTCATAATTTGATACTGTATCTGTTTTCCTTCAAAGTATAGAGCTTTTGGGGAAGGAAAGTATTGAACTGGGGGTTGGTCTGGCCTACTGGGCTGACATTAACTACAATTATGGGAAATGCAAAAGTTGTTTGGATATGGTAGTGTGTGGTTCTCTTTTGGAATTTTTTTCAGGTGATTTAATAATAATTTAAAACTACTATAGAAACTGCAGAGCAAAGGAAGTGGCTTAATGATCCTGAAGGGATTTCTTCTGATGGTAGCTTTTGTATTATCAAGTAAGATTCTATTTTCAGTTGTGTGTAAGCAAGTTTTTTTTTAGTGTAGGAGAAATACTTTTCCATTGTTTAACTGCAAAACAAGATGTTAAGGTATGCTTCAAAAATTTTGTAAATTGTTTATTTTAAACTTATCTGTTTGTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGAATGTCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGGAAACTTTTTTTTTTTCTATAGACTTTTTTCAGATAACATCTTCTGAGTCATAACCAGCCTGGCAGTATGATGGCCTAGATGCAGAGAAAACAGCTCCTTGGTGAATTGATAAGTAAAGGCAGAAAAGATTATATGTCATACCTCCATTGGGGAATAAGCATAACCCTGAGATTCTTACTACTGATGAGAACATTATCTGCATATGCCAAAAAATTTTAAGCAAATGAAAGCTACCAATTTAAAGTTACGGAATCTACCATTTTAAAGTTAATTGCTTGTCAAGCTATAACCACAAAAATAATGAATTGATGAGAAATACAATGAAGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAGACAGGTATCTCTTCGTTATCAGAAGAGTTGCTTCATTTCATCTGGGAGCAGAAAACAGCAGGCAGCTGTTAACAGATAAGTTTAACTTGCATCTGCAGTATTGCATGTTAGGGATAAGTGCTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCTAGGGGATTTCAGGATTGAGAAATTTTTCCATCGAGCCTTTTTAAAATTGTAGGACTTGTTCCTGTGGGCTTCAGTGATGGGATAGTACACTTCACTCAGAGGCATTTGCATCTTTAAATAATTTCTTAAAAGCCTCTAAAGTGATCAGTGCCTTGATGCCAACTAAGGAAATTTGTTTAGCATTGAATCTCTGAAGGCTCTATGAAAGGAATAGCATGATGTGCTGTTAGAATCAGATGTTACTGCTAAAATTTACATGTTGTGATGTAAATTGTGTAGAAAACCATTAAATCATTCAAAATAATAAA

Disease and interactions

DiseasePMIDDysfunction_typeData source
gallbladder cancer27420766expressionPMC6372806
gastric cancer27887846expressionPMC6372806
renal cell carcinoma25480417expressionPMC6372806
gastric cancer28942451regulatedPMC6372806
endometrial cancer27693631expressionPMC6372806
esophageal cancer25613496regulatedPMC6372806
osteosarcoma25431257regulatedPMC6372806
25773124PMC6372806
hepatocellular carcinoma28469957expressionPMC6372806
osteosarcoma28346809expressionPMC6372806
renal cell carcinoma25600645expressionPMC6372806
28535533expressionPMC6372806
bladder cancer24449823expressionPMC6372806
gastric cancer27259812expressionPMC6372806
breast cancer28915533expressionPMC6372806
breast cancer26917489regulatedPMC6372806
26335021PMC6372806
gastric cancer25280565expressionPMC6372806
hepatocellular carcinoma21678027expressionPMC6372806
colorectal cancer25025966expressionPMC6372806
cholangiocarcinoma28059437expressionPMC6372806
multiple myeloma28295550expressionPMC6372806
tongue cancer28260102expressionPMC6372806
glioma26619802expressionPMC6372806
cervical cancer26242259expressionPMC6372806
colorectal cancer25446987expressionPMC6372806
mantle cell lymphoma27998273expressionPMC6372806
cervical cancer26798987expressionPMC6372806
colorectal cancer28069878expressionPMC6372806
thyroid cancer27470543expressionPMC6372806
bladder cancer28648755expressionPMC6372806
oral squamous cell carcinoma28926115expressionPMC6372806
hepatocellular carcinoma28543721expressionPMC6372806
prostate cancer23845456expressionPMC6372806
gastric cancer28276823expressionPMC6372806
bladder cancer23153939expressionPMC6372806
non-small-cell lung cancer25217850expressionPMC6372806
renal cell carcinoma27655020expressionPMC6372806
choriocarcinoma29096355expressionPMC6372806
oral squamous cell carcinoma26522444expressionPMC6372806
breast cancer27197265expressionPMC6372806
lung cancer23243023expressionPMC6372806
hypertension28056547expressionPMC6372806
hepatocellular carcinoma24468535expressionPMC6372806
pancreatic cancer25269958expressionPMC6372806
osteosarcoma26575981expressionPMC6372806
breast cancer26676637expressionPMC6372806
thyroid cancer28543663expressionPMC6372806
hepatocellular carcinoma28720061expressionPMC6372806
multiple myeloma25187517expressionPMC6372806
tongue cancer27586393expressionPMC6372806
gastric cancer28268166expressionPMC6372806
calcific aortic valve disease28522163expressionPMC6372806
esophageal cancer26493997expressionPMC6372806
pancreatic cancer28701723expressionPMC6372806
osteosarcoma28098894expressionPMC6372806
liver fibrosis26435214expressionPMC6372806
endometrial cancer25085246regulatedPMC6372806
nasopharyngeal carcinoma27584791regulatedPMC6372806
esophageal cancer27935117expressionPMC6372806
colorectal cancer29436635expressionPMC6372806
lung cancer28615056regulatedPMC6372806
esophageal cancer27470544expressionPMC6372806
glioma26938295expressionPMC6372806
osteoarthritis28590075expressionPMC6372806
hepatocellular carcinoma28722813expressionPMC6372806
29051139expressionPMC6372806
gallbladder cancer29058818expressionPMC6372806
retinoblastoma29073720expressionPMC6372806
diabetes mellitus29110299expressionPMC6372806
22487937expressionPMC6372806
multiple myeloma24583225expressionPMC6372806
Parkinson's disease27021022expressionPMC6372806
glioma29202181expressionPMC6372806
osteosarcoma29204769expressionPMC6372806
multiple myeloma29214735expressionPMC6372806
non-small-cell lung cancer29215698expressionPMC6372806
pancreatic cancer29215734expressionPMC6372806
colon cancer29226325expressionPMC6372806
29227193expressionPMC6372806
29258822expressionPMC6372806
29274336expressionPMC6372806
osteosarcoma29290771expressionPMC6372806
esophageal squamous cell carcinoma25538231regulationPMC5753334
gallbladder cancer24658096regulationPMC5753334
colon cancer25546229regulationPMC5753334
colorectal cancer25031737regulationPMC5753334
bladder cancer24373479regulationPMC5753334
breast cancer22492512regulationPMC5753334
breast cancer22996375regulationPMC5753334
breast cancer24499465regulationPMC5753334
cancer23463798regulationPMC5753334
cancer24757675regulationPMC5753334
tumor24721780regulationPMC5753334
prostate cancer23726266PMC5753334
cervical cancer24932303PMC5753334
pancreatic ductal adenocarcinoma24815433PMC5753334
nasopharyngeal carcinoma23688988PMC5753334
bladder cancer22722759PMC5753334
gastric cancer24857172PMC5753334
colorectal cancer24244343PMC5753334
melanoma24892958PMC5753334
breast cancer24525122PMC5753334
neuroblastoma24742640PMC5753334
prostate cancer22349460PMC5753334
osteosarcoma17660802PMC5753334
non-small cell lung cancer24313945PMC5753334
multiple myeloma25369863PMC5753334
breast cancer26918449PMC5753334
breast cancer 26926567PMC5753334
gastric cancer 26871474PMC5753334
acute myocardial infarction25035150PMC5753334
diabetes mellitus25356875PMC5753334
glioblastoma25772239PMC5753334
ovarian cancer24379988PMC5753334
esophageal squamous cell carcinoma27015363PMC5753334
colorectal cancer21503572PMC5753334
lung cancer22491206PMC5753334
hepatocelluar carcinoma22493738mutationPMC5753334
paraspeckle disintegration19188602mutationPMC5753334
renal cancer26461224interactionPMC5753334
nasopharyngeal carcinoma26482776interactionPMC5753334
cervical cancer26311052interactionPMC5753334
non-small cell lung cancer26265046interactionPMC5753334
lung cancer26415832interactionPMC5753334
"hepatocellular carcinoma
prostate cancer26516927interactionPMC5753334
cervical cancer20213048InteractionPMC5753334
non-small-cell lung cancer25036876interactionPMC5753334
breast cancer26191181interactionPMC5753334
pre-eclampsia26722461interactionPMC5753334
breast cancer26275461interactionPMC5753334
glioma26649728interactionPMC5753334
lung adenocarcinoma20937273interactionPMC5753334
cervical cancer26400521expressionPMC5753334
proliferative vitreoretinopathy26241674expressionPMC5753334
gastric cancer26096073expressionPMC5753334
non-small cell lung cancer26131129expressionPMC5753334
non-small cell lung cancer22088988expressionPMC5753334
triple-negative breast cancer25996380expressionPMC5753334
hepatocelluar carcinoma16878148expressionPMC5753334
pancreatic cancer25811929expressionPMC5753334
pituitary adenoma24469926expressionPMC5753334
pancreatic cancer25481511expressionPMC5753334
glioma25613066expressionPMC5753334
non-small cell lung cancer12970751expressionPMC5753334
esophageal squamous cell carcinoma26406400expressionPMC5753334
laryngeal squamous cell carcinoma25257554expressionPMC5753334
endometrial stromal sarcoma16441420expressionPMC5753334
bladder cancer24006935expressionPMC5753334
cancer20711585expressionPMC5753334
cancer20864030expressionPMC5753334
cancer23660942expressionPMC5753334
decreased myogenesis23485710expressionPMC5753334
diabetes mellitus24436191expressionPMC5753334
hepatocelluar carcinoma17006932expressionPMC5753334
hepatocelluar carcinoma24183851expressionPMC5753334
lung adenocarcinoma19690017expressionPMC5753334
lung cancer24667321expressionPMC5753334
non-small cell lung cancer21550244expressionPMC5753334
non-small cell lung cancer21903344expressionPMC5753334
non-small cell lung cancer22817756expressionPMC5753334
osteosarcoma20951849expressionPMC5753334
small cell lung cancer22928560expressionPMC5753334
papillary thyroid carcinoma25997963expressionPMC5753334
neuroblastoma20149803expressionPMC5753334
lung cancer26137228expressionPMC5753334
laryngeal squamous cell carcinoma24817925expressionPMC5753334
Responsive image
Level of interactionTypeTargetPMIDData source
DNA-TFregulationCREB20149803PMC5753334
RNA-ProteinbindingSR20797886PMC5753334
RNA-ProteinbindingSR proteins 20797886PMC5753334
RNA-ProteinregulationSR protein family20864030PMC5753334
RNA-ProteinregulationSRSF120864030PMC5753334
RNA-Proteinbindingp54nrb21444682PMC5753334
RNA-ProteinbindingPSF21444682PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
RNA-ProteinregulationRNPS122355166PMC5753334
RNA-ProteinregulationSRm16022355166PMC5753334
RNA-ProteinregulationIBP16022355166PMC5753334
RNA-Proteinregulationpre-mRNA splicing factors23698766PMC5753334
RNA-DNAregulationBcl-225036876PMC5753334
RNA-DNAbindingSp1 and LTBP3 promoter25187517PMC5753334
regulationCisplatin and paclitaxel25257554PMC5753334
RNA-RNAregulationSiRNA25280565PMC5753334
RNA-ProteinregulationPI3K/AKT signaling pathway25431257PMC5753334
RNA-RNAregulationmiR-101 and miR-21725538231PMC5753334
RNA-ProteinregulationCCL525546229PMC5753334
RNA-ProteinregulationATM-CHK2 pathway25613496PMC5753334
RNA-ProteinregulationRANKL25817340PMC5753334
regulationPI3K-AKT pathway26191181PMC5753334
RNA-RNAregulationmiRNA-12426242259PMC5753334
RNA-ProteinbindingTDP-4326265046PMC5753334
RNA-RNAregulationhsa-miR-126275461PMC5753334
RNA-RNAregulationmiR-14526311052PMC5753334
DNA-ProteinregulationSp1/326352013PMC5753334
RNA-ProteinregulationEZH2 (enhancer of zeste homolog 2) and H3K27me326415832PMC5753334
DNA-RNAregulationmiR-21726415832PMC5753334
RNA-RNAbindingmiR-200s26461224PMC5753334
RNA-RNAregulationmiR-126482776PMC5753334
RNA-ProteinbindingEZH226516927PMC5753334
RNA-ProteinregulationN-cadherin, Vimentin, E-cadherin26522444PMC5753334
RNA-ProteinregulationZO-1, occludin and claudin-526619802PMC5753334
RNA-RNAregulationmiR-14026619802PMC5753334
regulationERK/MAPK signaling26649728PMC5753334
RNA-ProteinregulationSox2 and Nestin26649728PMC5753334
RNA-RNAregulationHsa-miR-126676637PMC5753334
RNA-Proteinregulationpro-apoptotic proteins including cleaved caspase-3, cleaved caspase-9 and cleaved poly (ADP-ribose) 26722461PMC5753334
RNA-DNAregulationPCDH1026871474PMC5753334
RNA-ProteinbindingEZH226871474PMC5753334
RNA-RNAbindingmiR-124 26918449PMC5753334
RNA-DNAregulationcyclin-dependent kinase 4 (CDK4)26918449PMC5753334
RNA-DNAregulationcdc4226926567PMC5753334
RNA-RNAbindingmiR-1 26926567PMC5753334

Conservation

Conserved in: 10 species
Not found in: 1 species
Most distant counterpart in: Marmoset
Conserved species: Chimp, Bonobo, Gorilla, Orangutan, Rhesus, Crab-eating macaque, Atys, Baboon, Green monkey, Marmoset
Not found in: Lemur
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Human

MSTRG.22375.52

Counterpart found

Chimp

TCONS_00020732

Exonic Identity 99%

Locus Identity 99%
Counterpart found

Bonobo

TCONS_00022393

Exonic Identity 93%

Locus Identity 99%
Counterpart found

Gorilla

TCONS_00005532

Exonic Identity 16%

Locus Identity 17%
Counterpart found

Orangutan

TCONS_00007273

Exonic Identity 0%

Locus Identity 0%
Counterpart found

Rhesus

TCONS_00069425

Exonic Identity 0%

Locus Identity 0%
Counterpart found

MacacaFascicularis

TCONS_00108125

Exonic Identity 0%

Locus Identity 95%
Counterpart found

Atys

TCONS_00089607

Exonic Identity 0%

Locus Identity 95%
Counterpart found

Baboon

TCONS_00052525

Exonic Identity 0%

Locus Identity 0%
Counterpart found

GreenMonkey

TCONS_00003667

Exonic Identity 55%

Locus Identity 77%
Counterpart found

Marmoset

TCONS_00083298

Exonic Identity 0%

Locus Identity 0%
Counterpart not found

Lemur

MSTRG.22375.52

Human non-coding transcript

Open the region of interest in the ENSEMBL Browser

ENSEMBL Browser

Check the reference ENSEMBL
transcript ID

ENSEMBL Transcript

Open the region of interest in the UCSC Genome Browser

UCSC Genome Browser