MSTRG.22374.138

Human non-coding transcript

Reference

Relation to reference A transfrag falling entirely within a reference intron
Reference ENSEMBL ID ENST00000610851
Reference alias MALAT1
Biotype of reference transcript lincRNA
Reference Gene ID ENSG00000251562
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Isoforms

ENSG00000251562 MSTRG.22374.97 MSTRG.22375.13 MSTRG.22375.14 MSTRG.22375.19 ENST00000544868 MSTRG.22374.32 MSTRG.22374.15 MSTRG.22374.103 MSTRG.22374.72 MSTRG.22374.13 MSTRG.22374.55 MSTRG.22374.56 MSTRG.22374.50 MSTRG.22374.52 MSTRG.22374.59 MSTRG.22374.38 ENST00000618925 MSTRG.22375.87 MSTRG.22375.81 MSTRG.22375.62 MSTRG.22375.69 MSTRG.22375.44 MSTRG.22375.49 ENST00000617791 MSTRG.22375.28 MSTRG.22375.22 MSTRG.22375.20 MSTRG.22375.21 ENST00000619449 ENST00000616691 MSTRG.22374.83 ENST00000610851 MSTRG.22374.138 ENST00000618132 MSTRG.22374.116 MSTRG.22374.117 MSTRG.22374.119 MSTRG.22374.69 MSTRG.22375.97 MSTRG.22374.12 MSTRG.22374.144 ENST00000616527 ENST00000620902 MSTRG.22375.2 MSTRG.22375.56 MSTRG.22375.52 ENST00000508832 MSTRG.22375.34 MSTRG.22374.6 MSTRG.22374.8 MSTRG.22374.9
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lncRNA

Transcript ID MSTRG.22374.138
Chromosome 11
Start 65505025
Stop 65506009
Strand -
Exons 3
Length 673 nt
Protein coding potential Low

Expession

Sample ID Sample type Expression (TPM)
ENCSR000CUJfibroblast of the aortic adventitia3401.126624
ENCSR000AHHheart643.518
ENCSR908ZAShepatocyte584.288052
ENCSR000AASsmooth muscle cell of trachea544.3853780000001
ENCSR800WIYtransverse colon525.852842
ENCSR000AFNuterus520.725378
ENCSR801MKVadrenal gland466.50875
ENCSR000AAUsmooth muscle cell of the umbilical artery429.77781799999997
ENCSR244ISQneural progenitor cell422.28033099999993
ENCSR995JXEneural cell373.235512
ENCSR052FJAsmooth muscle cell371.160594
ENCSR000CUEarticular chondrocyte of knee joint367.57414500000004
ENCSR000CVTGM12878359.107152
ENCSR645TCGomental fat pad350.558287
ENCSR729CAZomental fat pad332.449225
ENCSR158KFOomental fat pad285.677974
ENCSR369RVNcardiac ventricle fibroblast284.528576
ENCSR226KMLright lobe of liver262.386379
ENCSR000AAVuterine smooth muscle cell260.657938
ENCSR586SYAbody of pancreas229.010694
ENCSR504NIUsubcutaneous adipose tissue225.783663
ENCSR391VGUheart left ventricle220.03822599999998
ENCSR485WBRgastroesophageal sphincter205.770084
ENCSR528ZKNgastroesophageal sphincter198.517301
ENCSR438YPFbreast epithelium194.56891299999998
ENCSR000CPGK562189.215046
ENCSR071ZLMuterus177.59196200000002
ENCSR000AAQrenal cortical epithelial cell171.399974
ENCSR000AEUliver171.08805800000002
ENCSR434TEUbreast epithelium170.39872
ENCSR000CUOmesenchymal stem cell of Wharton's jelly163.02128000000002
ENCSR580GSXA172157.89348999999999
ENCSR474TRGesophagus squamous epithelium154.485047
ENCSR480SLDsuprapubic skin151.98570800000002
ENCSR894WMQmyocyte150.050774
ENCSR094VRQbreast epithelium145.79290600000002
ENCSR000CUBhair follicle dermal papilla cell144.447835
ENCSR000CUKthoracic aorta endothelial cell142.69941699999998
ENCSR797BPPfibroblast of arm134.45453899999998
ENCSR000CTXpericyte cell132.746419
ENCSR967JPIgastrocnemius medialis131.156543
ENCSR880EGOSJSA1125.14914499999999
ENCSR630VJNtransverse colon125.118641
ENCSR878EUTglomerular endothelial cell122.114621
ENCSR822SUGairway epithelial cell118.92293000000001
ENCSR108MAUsuprapubic skin115.659276
ENCSR678TMVgastrocnemius medialis110.699546
ENCSR110BDYcardiac atrium fibroblast109.35778300000001
ENCSR436QDUheart left ventricle109.11868899999999
ENCSR000AAAaortic smooth muscle cell104.023415
ENCSR272UNOtibial nerve97.581515
ENCSR754WLWadrenal gland97.525643
ENCSR862RGXsuprapubic skin94.79753000000001
ENCSR841ADZovary91.106872
ENCSR938LSPGM2333889.77005799999999
ENCSR000CQAK56289.16431800000001
ENCSR708VVEsubcutaneous adipose tissue88.082309
ENCSR373BDGkidney epithelial cell85.868955
ENCSR406SAWupper lobe of left lung85.05726700000001
ENCSR504QMKright lobe of liver83.967848
ENCSR571RXEright atrium auricular region83.25166999999999
ENCSR354QPNesophagus squamous epithelium76.96702900000001
ENCSR000AAIdermis blood vessel endothelial cell75.710144
ENCSR460YCSlower leg skin72.826408
ENCSR000AARtracheal epithelial cell72.211472
ENCSR182CBUesophagus muscularis mucosa65.478134
ENCSR457ENPright atrium auricular region63.769017000000005
ENCSR313CODupper lobe of left lung57.122446999999994
ENCSR812AKXsigmoid colon56.895616000000004
ENCSR680USEhair follicular keratinocyte56.712793999999995
ENCSR837ZLYthoracic aorta54.104184
ENCSR000CUIskeletal muscle satellite cell53.944607
ENCSR535VTRHT108046.659024
ENCSR257NIRPeyer's patch45.232268
ENCSR001HHKOCI-LY743.820621
ENCSR919MZMendometrial microvascular endothelial cells42.283685
ENCSR094GVZsigmoid colon41.203624
ENCSR042GYHovary41.079316999999996
ENCSR897KTOepithelial cell of alveolus of lung39.482692
ENCSR815UVLmammary microvascular endothelial cell36.924775
ENCSR321PGVlower leg skin34.793396
ENCSR362HMXpericardium fibroblast34.338291
ENCSR080HPTomental fat pad33.210645
ENCSR118TVRepithelial cell of proximal tubule31.723240000000004
ENCSR971KNWMG6331.672973
ENCSR609NZMgastrocnemius medialis30.802568
ENCSR254JJMDaoy30.043807
ENCSR625QJINCI-H46029.325753999999996
ENCSR696SMKM059J25.625964
ENCSR750ETSesophagus muscularis mucosa24.049234
ENCSR000CUQmelanocyte of skin23.150236
ENCSR740YMSgastroesophageal sphincter20.119957
ENCSR000AELK56219.468975
ENCSR919QJTH415.772123
ENCSR000CPIkeratinocyte15.540026999999998
ENCSR000CTZmesenchymal stem cell of adipose15.398354999999999
ENCSR000CUDmesenchymal stem cell of the bone marrow15.011688000000001
ENCSR371VGVmyometrial cell12.361538000000001
ENCSR000CULfibroblast of villous mesenchyme12.321549000000001
ENCSR000CUHfibroblast of dermis12.019492999999999
ENCSR332DBSLHCN-M211.454792999999999
ENCSR351OTLesophagus squamous epithelium10.99
ENCSR450ENKsuprapubic skin10.680378999999999
ENCSR671IYCbody of pancreas8.394236
ENCSR584JXDCaki28.09528
ENCSR320BRRRPMI-79516.880847
ENCSR000CUGvein endothelial cell6.305244
ENCSR000CUNmammary epithelial cell5.6546080000000005
ENCSR292TAPneural cell4.860316
ENCSR000CPJkeratinocyte4.767664
ENCSR000CUFosteoblast3.3226080000000002
ENCSR379YAEcardiac muscle cell2.913536
ENCSR233IJTastrocyte2.1454560000000003
ENCSR000AEMK5622.0458979999999998
ENCSR000CPUmammary epithelial cell1.524083
ENCSR194HVUspleen1.323531
ENCSR000COSGM128781.046468
ENCSR000CTRSK-N-SH0.8446020000000001
ENCSR000CPTMCF-70.824142
ENCSR471RUKstomach0.713344
ENCSR000AFIstomach0.5455800000000001
ENCSR000CPCHepG20.543479
ENCSR000CTKIMR-900.527554
ENCSR000CURmelanocyte of skin0.5183760000000001
ENCSR939ZRAHepG20.452995
ENCSR905HIDHepG20.374264
ENCSR653ZJFtransverse colon0.36101500000000003
ENCSR237IWZHepG20.339156
ENCSR000CPBendothelial cell of umbilical vein0.329281
ENCSR028ITNHepG20.325855
ENCSR701TSTprostate gland0.319474
ENCSR991HIRlower leg skin0.29999499999999996
ENCSR000CONA5490.281458
ENCSR973QSVK5620.272583
ENCSR904BCZK5620.25574
ENCSR463JBRCD4-positive helper T cell0.24119000000000002
ENCSR560RSZK5620.234567
ENCSR330KHNHepG20.22243800000000002
ENCSR000CTTSK-N-SH0.178285
ENCSR330UMQspleen0.152301
ENCSR718EWLK5620.137587
ENCSR898OPNK5620.106857
ENCSR628JYBK5620.095238
ENCSR000CPMfibroblast of lung0.08296
ENCSR219DXZK5620.081247
ENCSR000AFKthyroid gland0.080198
ENCSR000CTPIMR-900.075619
ENCSR000COUH1-hESC0.067767
ENCSR000COZendothelial cell of umbilical vein0.049349000000000004
ENCSR828TEImyotube0.045823
ENCSR000AFDoccipital lobe0.027392000000000003
ENCSR000COKK5620.025279
ENCSR192GBDK5620.00845
ENCSR977XUXneural stem progenitor cell0.007129000000000001
ENCSR968WKRbipolar neuron0.003072
ENCSR000AFFskeletal muscle tissue0.001812
ENCSR653DFZG4010.000145
ENCSR098BUFesophagus muscularis mucosa8.499999999999999e-05
ENCSR035SKVgastroesophageal sphincter7.900000000000001e-05
ENCSR000CUMsubcutaneous preadipocyte7.8e-05
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FASTA

>MSTRG.22374.138
GAGCATTGGAGATCAGCTTCCGCTAAGATGCTAGCTTGGCCAAGTCTGTTATGTTCACCTGAAAAAGTCTTAGCAGAGAATTTTTGCATTCCCACCCAAAAGCCCTCTCAGCCACTCAAATGCCTATCTTCTCCAGTCTACAAGTTACATGTTCCCACCCAGCATTACAGTTCTTGAACATGTTATTTCTCCACTTACTGGTTTAAGTTGGTTTTAGTCACTGGATAAGTATTATAATAGAGCTACTTAGCTGTGGTTTTAATACCCTTCTGTTAACAATTTGCAGGCAAATTAATGGCCTTTTCTAACATAGTTCAACCCACCAAAGACCTCGACACCATCGTTACCTTGAAACCGATTATGGATCATGCCCACAAGGATCCAAGCTACTGGCTGCATCGAGGTGAGGGGTGAAGGGTCTGTGCTAGATCAAAAGGCACGGGGTGGCGATGTGGCAGAGAAGTTGCTTGTGGGGAGACCTTGCTTTTAACAGGGGTACTTCAAGCATTCCTTCGGATGCTTCACTCCAGAAAGAGGGAGTTGAGGCAAGTCCTCATTACTAATAAAAATCAGTTTGCTCACATGCCAGTTACTCCAGCATAAAGCTGAAATCTATTCAATACTATTGTCCCATAACTGATCTGACTTTGTATGTAAATACAGAAAAAGCTTG

Disease and interactions

DiseasePMIDDysfunction_typeData source
gallbladder cancer27420766expressionPMC6372806
gastric cancer27887846expressionPMC6372806
renal cell carcinoma25480417expressionPMC6372806
gastric cancer28942451regulatedPMC6372806
endometrial cancer27693631expressionPMC6372806
esophageal cancer25613496regulatedPMC6372806
osteosarcoma25431257regulatedPMC6372806
25773124PMC6372806
hepatocellular carcinoma28469957expressionPMC6372806
osteosarcoma28346809expressionPMC6372806
renal cell carcinoma25600645expressionPMC6372806
28535533expressionPMC6372806
bladder cancer24449823expressionPMC6372806
gastric cancer27259812expressionPMC6372806
breast cancer28915533expressionPMC6372806
breast cancer26917489regulatedPMC6372806
26335021PMC6372806
gastric cancer25280565expressionPMC6372806
hepatocellular carcinoma21678027expressionPMC6372806
colorectal cancer25025966expressionPMC6372806
cholangiocarcinoma28059437expressionPMC6372806
multiple myeloma28295550expressionPMC6372806
tongue cancer28260102expressionPMC6372806
glioma26619802expressionPMC6372806
cervical cancer26242259expressionPMC6372806
colorectal cancer25446987expressionPMC6372806
mantle cell lymphoma27998273expressionPMC6372806
cervical cancer26798987expressionPMC6372806
colorectal cancer28069878expressionPMC6372806
thyroid cancer27470543expressionPMC6372806
bladder cancer28648755expressionPMC6372806
oral squamous cell carcinoma28926115expressionPMC6372806
hepatocellular carcinoma28543721expressionPMC6372806
prostate cancer23845456expressionPMC6372806
gastric cancer28276823expressionPMC6372806
bladder cancer23153939expressionPMC6372806
non-small-cell lung cancer25217850expressionPMC6372806
renal cell carcinoma27655020expressionPMC6372806
choriocarcinoma29096355expressionPMC6372806
oral squamous cell carcinoma26522444expressionPMC6372806
breast cancer27197265expressionPMC6372806
lung cancer23243023expressionPMC6372806
hypertension28056547expressionPMC6372806
hepatocellular carcinoma24468535expressionPMC6372806
pancreatic cancer25269958expressionPMC6372806
osteosarcoma26575981expressionPMC6372806
breast cancer26676637expressionPMC6372806
thyroid cancer28543663expressionPMC6372806
hepatocellular carcinoma28720061expressionPMC6372806
multiple myeloma25187517expressionPMC6372806
tongue cancer27586393expressionPMC6372806
gastric cancer28268166expressionPMC6372806
calcific aortic valve disease28522163expressionPMC6372806
esophageal cancer26493997expressionPMC6372806
pancreatic cancer28701723expressionPMC6372806
osteosarcoma28098894expressionPMC6372806
liver fibrosis26435214expressionPMC6372806
endometrial cancer25085246regulatedPMC6372806
nasopharyngeal carcinoma27584791regulatedPMC6372806
esophageal cancer27935117expressionPMC6372806
colorectal cancer29436635expressionPMC6372806
lung cancer28615056regulatedPMC6372806
esophageal cancer27470544expressionPMC6372806
glioma26938295expressionPMC6372806
osteoarthritis28590075expressionPMC6372806
hepatocellular carcinoma28722813expressionPMC6372806
29051139expressionPMC6372806
gallbladder cancer29058818expressionPMC6372806
retinoblastoma29073720expressionPMC6372806
diabetes mellitus29110299expressionPMC6372806
22487937expressionPMC6372806
multiple myeloma24583225expressionPMC6372806
Parkinson's disease27021022expressionPMC6372806
glioma29202181expressionPMC6372806
osteosarcoma29204769expressionPMC6372806
multiple myeloma29214735expressionPMC6372806
non-small-cell lung cancer29215698expressionPMC6372806
pancreatic cancer29215734expressionPMC6372806
colon cancer29226325expressionPMC6372806
29227193expressionPMC6372806
29258822expressionPMC6372806
29274336expressionPMC6372806
osteosarcoma29290771expressionPMC6372806
esophageal squamous cell carcinoma25538231regulationPMC5753334
gallbladder cancer24658096regulationPMC5753334
colon cancer25546229regulationPMC5753334
colorectal cancer25031737regulationPMC5753334
bladder cancer24373479regulationPMC5753334
breast cancer22492512regulationPMC5753334
breast cancer22996375regulationPMC5753334
breast cancer24499465regulationPMC5753334
cancer23463798regulationPMC5753334
cancer24757675regulationPMC5753334
tumor24721780regulationPMC5753334
prostate cancer23726266PMC5753334
cervical cancer24932303PMC5753334
pancreatic ductal adenocarcinoma24815433PMC5753334
nasopharyngeal carcinoma23688988PMC5753334
bladder cancer22722759PMC5753334
gastric cancer24857172PMC5753334
colorectal cancer24244343PMC5753334
melanoma24892958PMC5753334
breast cancer24525122PMC5753334
neuroblastoma24742640PMC5753334
prostate cancer22349460PMC5753334
osteosarcoma17660802PMC5753334
non-small cell lung cancer24313945PMC5753334
multiple myeloma25369863PMC5753334
breast cancer26918449PMC5753334
breast cancer 26926567PMC5753334
gastric cancer 26871474PMC5753334
acute myocardial infarction25035150PMC5753334
diabetes mellitus25356875PMC5753334
glioblastoma25772239PMC5753334
ovarian cancer24379988PMC5753334
esophageal squamous cell carcinoma27015363PMC5753334
colorectal cancer21503572PMC5753334
lung cancer22491206PMC5753334
hepatocelluar carcinoma22493738mutationPMC5753334
paraspeckle disintegration19188602mutationPMC5753334
renal cancer26461224interactionPMC5753334
nasopharyngeal carcinoma26482776interactionPMC5753334
cervical cancer26311052interactionPMC5753334
non-small cell lung cancer26265046interactionPMC5753334
lung cancer26415832interactionPMC5753334
"hepatocellular carcinoma
prostate cancer26516927interactionPMC5753334
cervical cancer20213048InteractionPMC5753334
non-small-cell lung cancer25036876interactionPMC5753334
breast cancer26191181interactionPMC5753334
pre-eclampsia26722461interactionPMC5753334
breast cancer26275461interactionPMC5753334
glioma26649728interactionPMC5753334
lung adenocarcinoma20937273interactionPMC5753334
cervical cancer26400521expressionPMC5753334
proliferative vitreoretinopathy26241674expressionPMC5753334
gastric cancer26096073expressionPMC5753334
non-small cell lung cancer26131129expressionPMC5753334
non-small cell lung cancer22088988expressionPMC5753334
triple-negative breast cancer25996380expressionPMC5753334
hepatocelluar carcinoma16878148expressionPMC5753334
pancreatic cancer25811929expressionPMC5753334
pituitary adenoma24469926expressionPMC5753334
pancreatic cancer25481511expressionPMC5753334
glioma25613066expressionPMC5753334
non-small cell lung cancer12970751expressionPMC5753334
esophageal squamous cell carcinoma26406400expressionPMC5753334
laryngeal squamous cell carcinoma25257554expressionPMC5753334
endometrial stromal sarcoma16441420expressionPMC5753334
bladder cancer24006935expressionPMC5753334
cancer20711585expressionPMC5753334
cancer20864030expressionPMC5753334
cancer23660942expressionPMC5753334
decreased myogenesis23485710expressionPMC5753334
diabetes mellitus24436191expressionPMC5753334
hepatocelluar carcinoma17006932expressionPMC5753334
hepatocelluar carcinoma24183851expressionPMC5753334
lung adenocarcinoma19690017expressionPMC5753334
lung cancer24667321expressionPMC5753334
non-small cell lung cancer21550244expressionPMC5753334
non-small cell lung cancer21903344expressionPMC5753334
non-small cell lung cancer22817756expressionPMC5753334
osteosarcoma20951849expressionPMC5753334
small cell lung cancer22928560expressionPMC5753334
papillary thyroid carcinoma25997963expressionPMC5753334
neuroblastoma20149803expressionPMC5753334
lung cancer26137228expressionPMC5753334
laryngeal squamous cell carcinoma24817925expressionPMC5753334
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Level of interactionTypeTargetPMIDData source
DNA-TFregulationCREB20149803PMC5753334
RNA-ProteinbindingSR20797886PMC5753334
RNA-ProteinbindingSR proteins 20797886PMC5753334
RNA-ProteinregulationSR protein family20864030PMC5753334
RNA-ProteinregulationSRSF120864030PMC5753334
RNA-Proteinbindingp54nrb21444682PMC5753334
RNA-ProteinbindingPSF21444682PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
RNA-ProteinregulationRNPS122355166PMC5753334
RNA-ProteinregulationSRm16022355166PMC5753334
RNA-ProteinregulationIBP16022355166PMC5753334
RNA-Proteinregulationpre-mRNA splicing factors23698766PMC5753334
RNA-DNAregulationBcl-225036876PMC5753334
RNA-DNAbindingSp1 and LTBP3 promoter25187517PMC5753334
regulationCisplatin and paclitaxel25257554PMC5753334
RNA-RNAregulationSiRNA25280565PMC5753334
RNA-ProteinregulationPI3K/AKT signaling pathway25431257PMC5753334
RNA-RNAregulationmiR-101 and miR-21725538231PMC5753334
RNA-ProteinregulationCCL525546229PMC5753334
RNA-ProteinregulationATM-CHK2 pathway25613496PMC5753334
RNA-ProteinregulationRANKL25817340PMC5753334
regulationPI3K-AKT pathway26191181PMC5753334
RNA-RNAregulationmiRNA-12426242259PMC5753334
RNA-ProteinbindingTDP-4326265046PMC5753334
RNA-RNAregulationhsa-miR-126275461PMC5753334
RNA-RNAregulationmiR-14526311052PMC5753334
DNA-ProteinregulationSp1/326352013PMC5753334
RNA-ProteinregulationEZH2 (enhancer of zeste homolog 2) and H3K27me326415832PMC5753334
DNA-RNAregulationmiR-21726415832PMC5753334
RNA-RNAbindingmiR-200s26461224PMC5753334
RNA-RNAregulationmiR-126482776PMC5753334
RNA-ProteinbindingEZH226516927PMC5753334
RNA-ProteinregulationN-cadherin, Vimentin, E-cadherin26522444PMC5753334
RNA-ProteinregulationZO-1, occludin and claudin-526619802PMC5753334
RNA-RNAregulationmiR-14026619802PMC5753334
regulationERK/MAPK signaling26649728PMC5753334
RNA-ProteinregulationSox2 and Nestin26649728PMC5753334
RNA-RNAregulationHsa-miR-126676637PMC5753334
RNA-Proteinregulationpro-apoptotic proteins including cleaved caspase-3, cleaved caspase-9 and cleaved poly (ADP-ribose) 26722461PMC5753334
RNA-DNAregulationPCDH1026871474PMC5753334
RNA-ProteinbindingEZH226871474PMC5753334
RNA-RNAbindingmiR-124 26918449PMC5753334
RNA-DNAregulationcyclin-dependent kinase 4 (CDK4)26918449PMC5753334
RNA-DNAregulationcdc4226926567PMC5753334
RNA-RNAbindingmiR-1 26926567PMC5753334

Conservation

Conserved in: 7 species
Not found in: 4 species
Most distant counterpart in: Marmoset
Conserved species: Chimp, Rhesus, Crab-eating macaque, Atys, Baboon, Green monkey, Marmoset
Not found in: Bonobo, Gorilla, Orangutan, Lemur
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Human

MSTRG.22374.138

Counterpart found

Chimp

TCONS_00024510

Exonic Identity 18%

Locus Identity 33%
Counterpart not found

Bonobo

Counterpart not found

Gorilla

Counterpart not found

Orangutan

Counterpart found

Rhesus

TCONS_00069424

Exonic Identity 2%

Locus Identity 56%
Counterpart found

MacacaFascicularis

TCONS_00104006

Exonic Identity 0%

Locus Identity 0%
Counterpart found

Atys

TCONS_00090725

Exonic Identity 0%

Locus Identity 48%
Counterpart found

Baboon

TCONS_00068209

Exonic Identity 0%

Locus Identity 0%
Counterpart found

GreenMonkey

TCONS_00000470

Exonic Identity 95%

Locus Identity 96%
Counterpart found

Marmoset

TCONS_00019232

Exonic Identity 25%

Locus Identity 37%
Counterpart not found

Lemur

MSTRG.22374.138

Human non-coding transcript

Open the region of interest in the ENSEMBL Browser

ENSEMBL Browser

Check the reference ENSEMBL
transcript ID

ENSEMBL Transcript

Open the region of interest in the UCSC Genome Browser

UCSC Genome Browser