MSTRG.22375.97

Human non-coding transcript

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lncRNA

Transcript ID MSTRG.22375.97
Chromosome 11
Start 65500223
Stop 65500970
Strand +
Exons 3
Length 613 nt
Protein coding potential Low

Expession

Sample ID Sample type Expression (TPM)
ENCSR450BNZPeyer's patch2502.365259
ENCSR000CTOMCF-72164.7541929999998
ENCSR839ZDHupper lobe of left lung1871.707284
ENCSR000CPYK5621442.113674
ENCSR000CPOGM12878806.575197
ENCSR495HDMprostate gland799.6535309999999
ENCSR000CPBendothelial cell of umbilical vein783.526409
ENCSR000CPJkeratinocyte737.382733
ENCSR000CPGK562698.73724
ENCSR000CQHendothelial cell of umbilical vein302.933271
ENCSR544SAUPeyer's patch295.001287
ENCSR000CPRHeLa-S3289.364551
ENCSR000CPTMCF-7280.328798
ENCSR000COOfibroblast of lung227.981585
ENCSR858QELtibial nerve212.259362
ENCSR000CPSK562203.07346
ENCSR000CPNSK-N-SH190.013739
ENCSR000CONA549172.655831
ENCSR000CPCHepG2162.415825
ENCSR000CPIkeratinocyte160.57177099999998
ENCSR000CQMK562131.370087
ENCSR000COQGM12878130.22221399999998
ENCSR000CPLkeratinocyte117.52456200000002
ENCSR000COPforeskin fibroblast89.222762
ENCSR434TEUbreast epithelium82.156903
ENCSR000CPHK56277.85558
ENCSR000CQFGM1287873.21685
ENCSR653ZJFtransverse colon63.304849
ENCSR420NLCPC-354.323902000000004
ENCSR080HPTomental fat pad51.786977
ENCSR000CTQIMR-9043.891957
ENCSR000CPMfibroblast of lung40.667908000000004
ENCSR201WVASK-MEL-534.960749
ENCSR000COVH1-hESC31.249249
ENCSR504VXCA37531.062944
ENCSR425RGZupper lobe of left lung29.061591999999997
ENCSR752UNJstomach28.344752000000003
ENCSR471RUKstomach26.577282
ENCSR729CAZomental fat pad25.105473999999997
ENCSR000CQEGM1287820.833687
ENCSR000CQKHepG220.282118
ENCSR016XPBHepG220.049153
ENCSR760EGMHepG219.724092000000002
ENCSR403SZNtransverse colon19.126885
ENCSR000CPQHeLa-S317.633942
ENCSR000CPEHepG216.91317
ENCSR000CTUMCF-714.497568
ENCSR000CPXfibroblast of lung14.136484
ENCSR000CPAendothelial cell of umbilical vein13.020394999999999
ENCSR000COXmammary epithelial cell11.69294
ENCSR671WMHsubcutaneous adipose tissue11.374408
ENCSR104ABFHepG211.283657
ENCSR000CTTSK-N-SH10.881866
ENCSR000COSGM1287810.700073
ENCSR000COTH1-hESC9.393696
ENCSR000CQOkeratinocyte7.013859
ENCSR426UUGHepG27.013661999999999
ENCSR275ZLFmesenchymal stem cell6.469325
ENCSR000CPKkeratinocyte6.231698000000001
ENCSR000AEMK5626.0347040000000005
ENCSR194HVUspleen5.7435599999999996
ENCSR827IXSsigmoid colon5.736708
ENCSR000CTRSK-N-SH5.018314
ENCSR630VJNtransverse colon4.731284
ENCSR800WIYtransverse colon4.716712
ENCSR000AELK5624.644029
ENCSR000CQPSK-N-SH4.186425
ENCSR379YAEcardiac muscle cell4.055696
ENCSR504NIUsubcutaneous adipose tissue3.9121919999999997
ENCSR976JGImesendoderm3.8721449999999997
ENCSR689ZJCHepG23.7359910000000003
ENCSR146LBDvagina3.644374
ENCSR708VVEsubcutaneous adipose tissue3.164145
ENCSR106SZNspleen3.09806
ENCSR330UMQspleen2.986207
ENCSR000CTSSK-N-SH2.9403029999999997
ENCSR796HLXtibial nerve2.898695
ENCSR272UNOtibial nerve2.6338220000000003
ENCSR438YPFbreast epithelium2.618273
ENCSR767LLPHepG22.553799
ENCSR801MKVadrenal gland2.516668
ENCSR900SGEspleen2.5099259999999997
ENCSR257NIRPeyer's patch2.308798
ENCSR701TSTprostate gland2.162208
ENCSR000CQQH1-hESC2.1065970000000003
ENCSR857WJKsigmoid colon2.019091
ENCSR000CQRH1-hESC1.984044
ENCSR700BEWmesendoderm1.8590400000000002
ENCSR000CUJfibroblast of the aortic adventitia1.7189990000000002
ENCSR750ETSesophagus muscularis mucosa1.657574
ENCSR000CQLK5621.599626
ENCSR000CTPIMR-901.3892120000000001
ENCSR158KFOomental fat pad1.302137
ENCSR463JBRCD4-positive helper T cell1.1130659999999999
ENCSR000AFNuterus1.073157
ENCSR000AEUliver1.058665
ENCSR663WGCmesenchymal stem cell1.0515510000000001
ENCSR308IKHHepG21.036299
ENCSR000AEDGM128781.031483
ENCSR000CQCA5491.009636
ENCSR182DAWHepG20.9060540000000001
ENCSR812AKXsigmoid colon0.893275
ENCSR776SXAHepG20.8371860000000001
ENCSR000CPFHepG20.817454
ENCSR385UPQK5620.797678
ENCSR841ADZovary0.768345
ENCSR000CQIHeLa-S30.7512220000000001
ENCSR305XWTHepG20.745976
ENCSR457WBKHepG20.693947
ENCSR129ROEK5620.6668029999999999
ENCSR094VRQbreast epithelium0.647733
ENCSR000CORGM128780.624297
ENCSR667PLJK5620.607162
ENCSR577OVPK5620.580237
ENCSR112YTDK5620.575487
ENCSR000CTKIMR-900.538693
ENCSR090UMIHepG20.525764
ENCSR689PHNHepG20.5085390000000001
ENCSR379VXWK5620.42745
ENCSR645TCGomental fat pad0.425221
ENCSR000CQJHeLa-S30.401672
ENCSR815JDYHepG20.394656
ENCSR251ABPK5620.383496
ENCSR354QPNesophagus squamous epithelium0.372774
ENCSR563YISK5620.372324
ENCSR000CPPHeLa-S30.357719
ENCSR762FEOK5620.332621
ENCSR681SMTHepG20.330243
ENCSR000CPDHepG20.319909
ENCSR781YNIHepG20.31674800000000003
ENCSR477TRXHepG20.315292
ENCSR000COUH1-hESC0.313895
ENCSR310FISMCF-70.30237800000000004
ENCSR905HIDHepG20.300636
ENCSR000CQGendothelial cell of umbilical vein0.291645
ENCSR306IOFK5620.28930100000000003
ENCSR000AFEparietal lobe0.259961
ENCSR422JMSHepG20.249085
ENCSR000COWH1-hESC0.24403699999999998
ENCSR958KSYHepG20.234221
ENCSR696LLZHepG20.22872399999999998
ENCSR907UTBK5620.2238
ENCSR246RRQHepG20.22031199999999998
ENCSR355OQCHepG20.217542
ENCSR306EIUK5620.21395999999999998
ENCSR706SXNHepG20.200848
ENCSR524YXQK5620.192665
ENCSR155EZLK5620.188346
ENCSR542ESYHepG20.186884
ENCSR205VSQK5620.18651199999999998
ENCSR552NBSK5620.171963
ENCSR925SYZHepG20.16705899999999999
ENCSR000YYNK5620.162267
ENCSR147ZBDHepG20.157072
ENCSR535YPKK5620.152604
ENCSR896MMUHepG20.150419
ENCSR985KATHepG20.144538
ENCSR485ZTCHepG20.141684
ENCSR000CPZK5620.137208
ENCSR586SYAbody of pancreas0.136986
ENCSR496ETJHepG20.13617
ENCSR000AAMpulmonary artery endothelial cell0.13126300000000002
ENCSR004RGIK5620.125422
ENCSR694LKYK5620.12033900000000002
ENCSR000AEOK5620.119951
ENCSR000COZendothelial cell of umbilical vein0.117934
ENCSR572AMCHepG20.113902
ENCSR376RJNHepG20.112943
ENCSR118TVRepithelial cell of proximal tubule0.110384
ENCSR838SMCHepG20.098212
ENCSR118KUNHepG20.09424500000000001
ENCSR281IUFK5620.08634700000000001
ENCSR000AALnasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa0.080023
ENCSR902WSKK5620.07825399999999999
ENCSR000CTMA5490.071823
ENCSR286OKWK5620.061888
ENCSR291DJHSK-MEL-50.05744
ENCSR610VTAHepG20.040918
ENCSR000AEXdiencephalon0.031741000000000005
ENCSR210DMLHepG20.028419999999999997
ENCSR898OPNK5620.027299
ENCSR000COYskeletal muscle myoblast0.024817
ENCSR067UNXHT10800.013608000000000002
ENCSR897KTOepithelial cell of alveolus of lung0.00777
ENCSR844QNTK5620.001652
ENCSR695XODHepG20.000426
ENCSR599PXDHepG21.4999999999999999e-05
ENCSR823WTAK5622e-06
ENCSR074UZMHepG21e-06
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FASTA

>MSTRG.22375.97
AGAAGAATTTGGAAGGCCTTAAATATAGTAGCTTAGTTTGAAAAATGTGAAGGACTTTCGTAACGGAAGTAATTCAAGATCAAGAGTAATTACCAACTTAATGTTTTTGCATTGGACTTTGAGTTAAGATTATTTTTTAAATCCTGAGGACTAGCATTAATTGACAGCTGACCCAGGTGCTACACAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAAGCTAGGAAGAAGGAAGGAGCGCTAACGATTTGGTGGTGAAGCTAGGAAAAAGGATTCCAGGAAGGAGCGAGTGCAATTTGGTGATGAAGGTAGCAGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAGTGGTTGGTAAAAATCCGTGAGGTCGGCAATATGTTGTTTTTCTGGAACTTACTTATGGTTTCTCTTTTTCAGGCTTATACTCATGAATCTTGTCTGAAGCTTTTGAGGGCAGACTG

Disease and interactions

DiseasePMIDDysfunction_typeData source
gallbladder cancer27420766expressionPMC6372806
gastric cancer27887846expressionPMC6372806
renal cell carcinoma25480417expressionPMC6372806
gastric cancer28942451regulatedPMC6372806
endometrial cancer27693631expressionPMC6372806
esophageal cancer25613496regulatedPMC6372806
osteosarcoma25431257regulatedPMC6372806
25773124PMC6372806
hepatocellular carcinoma28469957expressionPMC6372806
osteosarcoma28346809expressionPMC6372806
renal cell carcinoma25600645expressionPMC6372806
28535533expressionPMC6372806
bladder cancer24449823expressionPMC6372806
gastric cancer27259812expressionPMC6372806
breast cancer28915533expressionPMC6372806
breast cancer26917489regulatedPMC6372806
26335021PMC6372806
gastric cancer25280565expressionPMC6372806
hepatocellular carcinoma21678027expressionPMC6372806
colorectal cancer25025966expressionPMC6372806
cholangiocarcinoma28059437expressionPMC6372806
multiple myeloma28295550expressionPMC6372806
tongue cancer28260102expressionPMC6372806
glioma26619802expressionPMC6372806
cervical cancer26242259expressionPMC6372806
colorectal cancer25446987expressionPMC6372806
mantle cell lymphoma27998273expressionPMC6372806
cervical cancer26798987expressionPMC6372806
colorectal cancer28069878expressionPMC6372806
thyroid cancer27470543expressionPMC6372806
bladder cancer28648755expressionPMC6372806
oral squamous cell carcinoma28926115expressionPMC6372806
hepatocellular carcinoma28543721expressionPMC6372806
prostate cancer23845456expressionPMC6372806
gastric cancer28276823expressionPMC6372806
bladder cancer23153939expressionPMC6372806
non-small-cell lung cancer25217850expressionPMC6372806
renal cell carcinoma27655020expressionPMC6372806
choriocarcinoma29096355expressionPMC6372806
oral squamous cell carcinoma26522444expressionPMC6372806
breast cancer27197265expressionPMC6372806
lung cancer23243023expressionPMC6372806
hypertension28056547expressionPMC6372806
hepatocellular carcinoma24468535expressionPMC6372806
pancreatic cancer25269958expressionPMC6372806
osteosarcoma26575981expressionPMC6372806
breast cancer26676637expressionPMC6372806
thyroid cancer28543663expressionPMC6372806
hepatocellular carcinoma28720061expressionPMC6372806
multiple myeloma25187517expressionPMC6372806
tongue cancer27586393expressionPMC6372806
gastric cancer28268166expressionPMC6372806
calcific aortic valve disease28522163expressionPMC6372806
esophageal cancer26493997expressionPMC6372806
pancreatic cancer28701723expressionPMC6372806
osteosarcoma28098894expressionPMC6372806
liver fibrosis26435214expressionPMC6372806
endometrial cancer25085246regulatedPMC6372806
nasopharyngeal carcinoma27584791regulatedPMC6372806
esophageal cancer27935117expressionPMC6372806
colorectal cancer29436635expressionPMC6372806
lung cancer28615056regulatedPMC6372806
esophageal cancer27470544expressionPMC6372806
glioma26938295expressionPMC6372806
osteoarthritis28590075expressionPMC6372806
hepatocellular carcinoma28722813expressionPMC6372806
29051139expressionPMC6372806
gallbladder cancer29058818expressionPMC6372806
retinoblastoma29073720expressionPMC6372806
diabetes mellitus29110299expressionPMC6372806
22487937expressionPMC6372806
multiple myeloma24583225expressionPMC6372806
Parkinson's disease27021022expressionPMC6372806
glioma29202181expressionPMC6372806
osteosarcoma29204769expressionPMC6372806
multiple myeloma29214735expressionPMC6372806
non-small-cell lung cancer29215698expressionPMC6372806
pancreatic cancer29215734expressionPMC6372806
colon cancer29226325expressionPMC6372806
29227193expressionPMC6372806
29258822expressionPMC6372806
29274336expressionPMC6372806
osteosarcoma29290771expressionPMC6372806
esophageal squamous cell carcinoma25538231regulationPMC5753334
gallbladder cancer24658096regulationPMC5753334
colon cancer25546229regulationPMC5753334
colorectal cancer25031737regulationPMC5753334
bladder cancer24373479regulationPMC5753334
breast cancer22492512regulationPMC5753334
breast cancer22996375regulationPMC5753334
breast cancer24499465regulationPMC5753334
cancer23463798regulationPMC5753334
cancer24757675regulationPMC5753334
tumor24721780regulationPMC5753334
prostate cancer23726266PMC5753334
cervical cancer24932303PMC5753334
pancreatic ductal adenocarcinoma24815433PMC5753334
nasopharyngeal carcinoma23688988PMC5753334
bladder cancer22722759PMC5753334
gastric cancer24857172PMC5753334
colorectal cancer24244343PMC5753334
melanoma24892958PMC5753334
breast cancer24525122PMC5753334
neuroblastoma24742640PMC5753334
prostate cancer22349460PMC5753334
osteosarcoma17660802PMC5753334
non-small cell lung cancer24313945PMC5753334
multiple myeloma25369863PMC5753334
breast cancer26918449PMC5753334
breast cancer 26926567PMC5753334
gastric cancer 26871474PMC5753334
acute myocardial infarction25035150PMC5753334
diabetes mellitus25356875PMC5753334
glioblastoma25772239PMC5753334
ovarian cancer24379988PMC5753334
esophageal squamous cell carcinoma27015363PMC5753334
colorectal cancer21503572PMC5753334
lung cancer22491206PMC5753334
hepatocelluar carcinoma22493738mutationPMC5753334
paraspeckle disintegration19188602mutationPMC5753334
renal cancer26461224interactionPMC5753334
nasopharyngeal carcinoma26482776interactionPMC5753334
cervical cancer26311052interactionPMC5753334
non-small cell lung cancer26265046interactionPMC5753334
lung cancer26415832interactionPMC5753334
"hepatocellular carcinoma
prostate cancer26516927interactionPMC5753334
cervical cancer20213048InteractionPMC5753334
non-small-cell lung cancer25036876interactionPMC5753334
breast cancer26191181interactionPMC5753334
pre-eclampsia26722461interactionPMC5753334
breast cancer26275461interactionPMC5753334
glioma26649728interactionPMC5753334
lung adenocarcinoma20937273interactionPMC5753334
cervical cancer26400521expressionPMC5753334
proliferative vitreoretinopathy26241674expressionPMC5753334
gastric cancer26096073expressionPMC5753334
non-small cell lung cancer26131129expressionPMC5753334
non-small cell lung cancer22088988expressionPMC5753334
triple-negative breast cancer25996380expressionPMC5753334
hepatocelluar carcinoma16878148expressionPMC5753334
pancreatic cancer25811929expressionPMC5753334
pituitary adenoma24469926expressionPMC5753334
pancreatic cancer25481511expressionPMC5753334
glioma25613066expressionPMC5753334
non-small cell lung cancer12970751expressionPMC5753334
esophageal squamous cell carcinoma26406400expressionPMC5753334
laryngeal squamous cell carcinoma25257554expressionPMC5753334
endometrial stromal sarcoma16441420expressionPMC5753334
bladder cancer24006935expressionPMC5753334
cancer20711585expressionPMC5753334
cancer20864030expressionPMC5753334
cancer23660942expressionPMC5753334
decreased myogenesis23485710expressionPMC5753334
diabetes mellitus24436191expressionPMC5753334
hepatocelluar carcinoma17006932expressionPMC5753334
hepatocelluar carcinoma24183851expressionPMC5753334
lung adenocarcinoma19690017expressionPMC5753334
lung cancer24667321expressionPMC5753334
non-small cell lung cancer21550244expressionPMC5753334
non-small cell lung cancer21903344expressionPMC5753334
non-small cell lung cancer22817756expressionPMC5753334
osteosarcoma20951849expressionPMC5753334
small cell lung cancer22928560expressionPMC5753334
papillary thyroid carcinoma25997963expressionPMC5753334
neuroblastoma20149803expressionPMC5753334
lung cancer26137228expressionPMC5753334
laryngeal squamous cell carcinoma24817925expressionPMC5753334
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Level of interactionTypeTargetPMIDData source
DNA-TFregulationCREB20149803PMC5753334
RNA-ProteinbindingSR20797886PMC5753334
RNA-ProteinbindingSR proteins 20797886PMC5753334
RNA-ProteinregulationSR protein family20864030PMC5753334
RNA-ProteinregulationSRSF120864030PMC5753334
RNA-Proteinbindingp54nrb21444682PMC5753334
RNA-ProteinbindingPSF21444682PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
RNA-ProteinregulationRNPS122355166PMC5753334
RNA-ProteinregulationSRm16022355166PMC5753334
RNA-ProteinregulationIBP16022355166PMC5753334
RNA-Proteinregulationpre-mRNA splicing factors23698766PMC5753334
RNA-DNAregulationBcl-225036876PMC5753334
RNA-DNAbindingSp1 and LTBP3 promoter25187517PMC5753334
regulationCisplatin and paclitaxel25257554PMC5753334
RNA-RNAregulationSiRNA25280565PMC5753334
RNA-ProteinregulationPI3K/AKT signaling pathway25431257PMC5753334
RNA-RNAregulationmiR-101 and miR-21725538231PMC5753334
RNA-ProteinregulationCCL525546229PMC5753334
RNA-ProteinregulationATM-CHK2 pathway25613496PMC5753334
RNA-ProteinregulationRANKL25817340PMC5753334
regulationPI3K-AKT pathway26191181PMC5753334
RNA-RNAregulationmiRNA-12426242259PMC5753334
RNA-ProteinbindingTDP-4326265046PMC5753334
RNA-RNAregulationhsa-miR-126275461PMC5753334
RNA-RNAregulationmiR-14526311052PMC5753334
DNA-ProteinregulationSp1/326352013PMC5753334
RNA-ProteinregulationEZH2 (enhancer of zeste homolog 2) and H3K27me326415832PMC5753334
DNA-RNAregulationmiR-21726415832PMC5753334
RNA-RNAbindingmiR-200s26461224PMC5753334
RNA-RNAregulationmiR-126482776PMC5753334
RNA-ProteinbindingEZH226516927PMC5753334
RNA-ProteinregulationN-cadherin, Vimentin, E-cadherin26522444PMC5753334
RNA-ProteinregulationZO-1, occludin and claudin-526619802PMC5753334
RNA-RNAregulationmiR-14026619802PMC5753334
regulationERK/MAPK signaling26649728PMC5753334
RNA-ProteinregulationSox2 and Nestin26649728PMC5753334
RNA-RNAregulationHsa-miR-126676637PMC5753334
RNA-Proteinregulationpro-apoptotic proteins including cleaved caspase-3, cleaved caspase-9 and cleaved poly (ADP-ribose) 26722461PMC5753334
RNA-DNAregulationPCDH1026871474PMC5753334
RNA-ProteinbindingEZH226871474PMC5753334
RNA-RNAbindingmiR-124 26918449PMC5753334
RNA-DNAregulationcyclin-dependent kinase 4 (CDK4)26918449PMC5753334
RNA-DNAregulationcdc4226926567PMC5753334
RNA-RNAbindingmiR-1 26926567PMC5753334

Conservation

Conserved in: 10 species
Not found in: 1 species
Most distant counterpart in: Marmoset
Conserved species: Chimp, Bonobo, Gorilla, Orangutan, Rhesus, Crab-eating macaque, Atys, Baboon, Green monkey, Marmoset
Not found in: Lemur
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Human

MSTRG.22375.97

Counterpart found

Chimp

TCONS_00020732

Exonic Identity 98%

Locus Identity 99%
Counterpart found

Bonobo

TCONS_00022394

Exonic Identity 98%

Locus Identity 98%
Counterpart found

Gorilla

TCONS_00005532

Exonic Identity 0%

Locus Identity 0%
Counterpart found

Orangutan

TCONS_00007273

Exonic Identity 0%

Locus Identity 0%
Counterpart found

Rhesus

TCONS_00069425

Exonic Identity 0%

Locus Identity 0%
Counterpart found

MacacaFascicularis

TCONS_00108125

Exonic Identity 0%

Locus Identity 95%
Counterpart found

Atys

TCONS_00089607

Exonic Identity 0%

Locus Identity 95%
Counterpart found

Baboon

TCONS_00052525

Exonic Identity 0%

Locus Identity 0%
Counterpart found

GreenMonkey

TCONS_00003676

Exonic Identity 42%

Locus Identity 71%
Counterpart found

Marmoset

TCONS_00031137

Exonic Identity 0%

Locus Identity 0%
Counterpart not found

Lemur

MSTRG.22375.97

Human non-coding transcript

Open the region of interest in the ENSEMBL Browser

ENSEMBL Browser

Check the reference ENSEMBL
transcript ID

ENSEMBL Transcript

Open the region of interest in the UCSC Genome Browser

UCSC Genome Browser