MSTRG.22374.97

Human non-coding transcript

Reference

Relation to reference Exonic overlap with reference on the opposite strand
Reference ENSEMBL ID ENST00000534336
Reference alias MALAT1
Biotype of reference transcript lincRNA
Reference Gene ID ENSG00000251562
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Isoforms

ENSG00000251562 MSTRG.22374.97 MSTRG.22375.13 MSTRG.22375.14 MSTRG.22375.19 ENST00000544868 MSTRG.22374.32 MSTRG.22374.15 MSTRG.22374.103 MSTRG.22374.72 MSTRG.22374.13 MSTRG.22374.55 MSTRG.22374.56 MSTRG.22374.50 MSTRG.22374.52 MSTRG.22374.59 MSTRG.22374.38 ENST00000618925 MSTRG.22375.87 MSTRG.22375.81 MSTRG.22375.62 MSTRG.22375.69 MSTRG.22375.44 MSTRG.22375.49 ENST00000617791 MSTRG.22375.28 MSTRG.22375.22 MSTRG.22375.20 MSTRG.22375.21 ENST00000619449 ENST00000616691 MSTRG.22374.83 ENST00000610851 MSTRG.22374.138 ENST00000618132 MSTRG.22374.116 MSTRG.22374.117 MSTRG.22374.119 MSTRG.22374.69 MSTRG.22375.97 MSTRG.22374.12 MSTRG.22374.144 ENST00000616527 ENST00000620902 MSTRG.22375.2 MSTRG.22375.56 MSTRG.22375.52 ENST00000508832 MSTRG.22375.34 MSTRG.22374.6 MSTRG.22374.8 MSTRG.22374.9
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lncRNA

Transcript ID MSTRG.22374.97
Chromosome 11
Start 65504549
Stop 65505663
Strand -
Exons 3
Length 615 nt
Protein coding potential Low

Expession

Sample ID Sample type Expression (TPM)
ENCSR000CPQHeLa-S31019.799531
ENCSR000CQGendothelial cell of umbilical vein820.1902719999999
ENCSR000CPSK562645.779999
ENCSR000CPUmammary epithelial cell297.23355699999996
ENCSR000CQJHeLa-S3283.86159399999997
ENCSR000CPNSK-N-SH198.571825
ENCSR000COPforeskin fibroblast187.67922099999998
ENCSR000CPDHepG2171.044206
ENCSR000AFAmetanephros165.906196
ENCSR000CPLkeratinocyte119.970044
ENCSR000CONA549118.73013799999998
ENCSR000CQCA54981.662989
ENCSR000COOfibroblast of lung76.607208
ENCSR000CPYK56266.190884
ENCSR000CPRHeLa-S363.843501
ENCSR000COQGM1287862.102061
ENCSR000CPHK56253.86569
ENCSR000CQPSK-N-SH42.907084999999995
ENCSR000CQHendothelial cell of umbilical vein40.631046999999995
ENCSR000CQFGM1287836.205736
ENCSR000CQRH1-hESC35.501499
ENCSR000CQOkeratinocyte30.994544
ENCSR000CQIHeLa-S329.593578000000004
ENCSR000AFHspinal cord27.524784999999998
ENCSR000CQSendothelial cell of umbilical vein25.294795999999998
ENCSR000CQMK56214.727878
ENCSR000CPXfibroblast of lung13.825972
ENCSR000CQNkeratinocyte4.554938
ENCSR000CPEHepG22.907076
ENCSR849STRK5621.837633
ENCSR256PLHK5621.517728
ENCSR895BTEK5621.3649930000000001
ENCSR098NHIK5621.293834
ENCSR000AFBliver1.1312209999999998
ENCSR455VZHHepG20.976037
ENCSR000CQDforeskin fibroblast0.8873120000000001
ENCSR143UETK5620.763714
ENCSR000CUJfibroblast of the aortic adventitia0.636677
ENCSR905LVOCD14-positive monocyte0.580397
ENCSR000CPIkeratinocyte0.549061
ENCSR778AJOHepG20.508421
ENCSR883BXRHepG20.46156899999999995
ENCSR030AROHepG20.403571
ENCSR660ETTK5620.340487
ENCSR338CONK5620.317861
ENCSR000CPGK5620.302576
ENCSR961WVLK5620.286529
ENCSR000AEYfrontal cortex0.279883
ENCSR000AFGskin of body0.24868
ENCSR066FZLlarge intestine0.190573
ENCSR000CPBendothelial cell of umbilical vein0.16206199999999998
ENCSR000COSGM128780.147811
ENCSR000CUNmammary epithelial cell0.143323
ENCSR424YSVHepG20.143291
ENCSR000AANsmooth muscle cell of the pulmonary artery0.13556400000000002
ENCSR939ZRAHepG20.12384400000000001
ENCSR000CQAK5620.12203499999999999
ENCSR000COTH1-hESC0.11323599999999999
ENCSR205VSQK5620.11292
ENCSR313CODupper lobe of left lung0.097388
ENCSR482VRIsmall intestine0.087897
ENCSR000AAAaortic smooth muscle cell0.080932
ENCSR841ADZovary0.07762999999999999
ENCSR968WKRbipolar neuron0.063032
ENCSR000CUQmelanocyte of skin0.037725999999999996
ENCSR245BNJK5620.028360000000000003
ENCSR347ZHQHepG20.027986
ENCSR000CUHfibroblast of dermis0.010164
ENCSR000CUGvein endothelial cell0.009475
ENCSR000CUMsubcutaneous preadipocyte0.00866
ENCSR000CQKHepG21.1e-05
ENCSR000CQQH1-hESC5e-06
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FASTA

>MSTRG.22374.97
CCTTGAAACCGATTATGGATCATGCCCACAAGGATCCAAGCTACTGGCTGCATCGAGAAGCCCAGGGGTACTTCAAGCATTCCTTCGGATGCTTCACTCCAGAAAGAGGGAGTTGAGGCAAGTCCTCATTACTAATAAAAATCAGGTGAGGCTGACACTTCTCTTGACCTTAGGATAATAGCGCTTTGTTGTCTCTCCTGCCACAGGAAGGCTCCATGGTTGTCCTACTTTAAGCCTTCGGTGCCTTTAGTGAGGGGTACCTGAAAAATCTTAAAAAAAGGCTATTTTTTCTTACTGGGTCTGGCTTCTCTGGCCCTTCGCATACGTGTGTCTGCTGAGTGTTCCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACATAAACAATGCACTAAAGATCACTGAACTGTTTAAACATTTCCACTTGCCAGTTTAATTTCTTGAAGACTGTTGCTTGTTTGGAATGTTTCTTGTCACTGATTTTAAGGTTGCATCTGGAAAAGACTAAAGGCTTCAGTCCCCTCCCACCACCAGAAATGAACAAAAAGCATTTTACCTAAAAATACACCAGCAAAATGTACTCAGCTTCAATCACAAATACGA

Disease and interactions

DiseasePMIDDysfunction_typeData source
gallbladder cancer27420766expressionPMC6372806
gastric cancer27887846expressionPMC6372806
renal cell carcinoma25480417expressionPMC6372806
gastric cancer28942451regulatedPMC6372806
endometrial cancer27693631expressionPMC6372806
esophageal cancer25613496regulatedPMC6372806
osteosarcoma25431257regulatedPMC6372806
25773124PMC6372806
hepatocellular carcinoma28469957expressionPMC6372806
osteosarcoma28346809expressionPMC6372806
renal cell carcinoma25600645expressionPMC6372806
28535533expressionPMC6372806
bladder cancer24449823expressionPMC6372806
gastric cancer27259812expressionPMC6372806
breast cancer28915533expressionPMC6372806
breast cancer26917489regulatedPMC6372806
26335021PMC6372806
gastric cancer25280565expressionPMC6372806
hepatocellular carcinoma21678027expressionPMC6372806
colorectal cancer25025966expressionPMC6372806
cholangiocarcinoma28059437expressionPMC6372806
multiple myeloma28295550expressionPMC6372806
tongue cancer28260102expressionPMC6372806
glioma26619802expressionPMC6372806
cervical cancer26242259expressionPMC6372806
colorectal cancer25446987expressionPMC6372806
mantle cell lymphoma27998273expressionPMC6372806
cervical cancer26798987expressionPMC6372806
colorectal cancer28069878expressionPMC6372806
thyroid cancer27470543expressionPMC6372806
bladder cancer28648755expressionPMC6372806
oral squamous cell carcinoma28926115expressionPMC6372806
hepatocellular carcinoma28543721expressionPMC6372806
prostate cancer23845456expressionPMC6372806
gastric cancer28276823expressionPMC6372806
bladder cancer23153939expressionPMC6372806
non-small-cell lung cancer25217850expressionPMC6372806
renal cell carcinoma27655020expressionPMC6372806
choriocarcinoma29096355expressionPMC6372806
oral squamous cell carcinoma26522444expressionPMC6372806
breast cancer27197265expressionPMC6372806
lung cancer23243023expressionPMC6372806
hypertension28056547expressionPMC6372806
hepatocellular carcinoma24468535expressionPMC6372806
pancreatic cancer25269958expressionPMC6372806
osteosarcoma26575981expressionPMC6372806
breast cancer26676637expressionPMC6372806
thyroid cancer28543663expressionPMC6372806
hepatocellular carcinoma28720061expressionPMC6372806
multiple myeloma25187517expressionPMC6372806
tongue cancer27586393expressionPMC6372806
gastric cancer28268166expressionPMC6372806
calcific aortic valve disease28522163expressionPMC6372806
esophageal cancer26493997expressionPMC6372806
pancreatic cancer28701723expressionPMC6372806
osteosarcoma28098894expressionPMC6372806
liver fibrosis26435214expressionPMC6372806
endometrial cancer25085246regulatedPMC6372806
nasopharyngeal carcinoma27584791regulatedPMC6372806
esophageal cancer27935117expressionPMC6372806
colorectal cancer29436635expressionPMC6372806
lung cancer28615056regulatedPMC6372806
esophageal cancer27470544expressionPMC6372806
glioma26938295expressionPMC6372806
osteoarthritis28590075expressionPMC6372806
hepatocellular carcinoma28722813expressionPMC6372806
29051139expressionPMC6372806
gallbladder cancer29058818expressionPMC6372806
retinoblastoma29073720expressionPMC6372806
diabetes mellitus29110299expressionPMC6372806
22487937expressionPMC6372806
multiple myeloma24583225expressionPMC6372806
Parkinson's disease27021022expressionPMC6372806
glioma29202181expressionPMC6372806
osteosarcoma29204769expressionPMC6372806
multiple myeloma29214735expressionPMC6372806
non-small-cell lung cancer29215698expressionPMC6372806
pancreatic cancer29215734expressionPMC6372806
colon cancer29226325expressionPMC6372806
29227193expressionPMC6372806
29258822expressionPMC6372806
29274336expressionPMC6372806
osteosarcoma29290771expressionPMC6372806
esophageal squamous cell carcinoma25538231regulationPMC5753334
gallbladder cancer24658096regulationPMC5753334
colon cancer25546229regulationPMC5753334
colorectal cancer25031737regulationPMC5753334
bladder cancer24373479regulationPMC5753334
breast cancer22492512regulationPMC5753334
breast cancer22996375regulationPMC5753334
breast cancer24499465regulationPMC5753334
cancer23463798regulationPMC5753334
cancer24757675regulationPMC5753334
tumor24721780regulationPMC5753334
prostate cancer23726266PMC5753334
cervical cancer24932303PMC5753334
pancreatic ductal adenocarcinoma24815433PMC5753334
nasopharyngeal carcinoma23688988PMC5753334
bladder cancer22722759PMC5753334
gastric cancer24857172PMC5753334
colorectal cancer24244343PMC5753334
melanoma24892958PMC5753334
breast cancer24525122PMC5753334
neuroblastoma24742640PMC5753334
prostate cancer22349460PMC5753334
osteosarcoma17660802PMC5753334
non-small cell lung cancer24313945PMC5753334
multiple myeloma25369863PMC5753334
breast cancer26918449PMC5753334
breast cancer 26926567PMC5753334
gastric cancer 26871474PMC5753334
acute myocardial infarction25035150PMC5753334
diabetes mellitus25356875PMC5753334
glioblastoma25772239PMC5753334
ovarian cancer24379988PMC5753334
esophageal squamous cell carcinoma27015363PMC5753334
colorectal cancer21503572PMC5753334
lung cancer22491206PMC5753334
hepatocelluar carcinoma22493738mutationPMC5753334
paraspeckle disintegration19188602mutationPMC5753334
renal cancer26461224interactionPMC5753334
nasopharyngeal carcinoma26482776interactionPMC5753334
cervical cancer26311052interactionPMC5753334
non-small cell lung cancer26265046interactionPMC5753334
lung cancer26415832interactionPMC5753334
"hepatocellular carcinoma
prostate cancer26516927interactionPMC5753334
cervical cancer20213048InteractionPMC5753334
non-small-cell lung cancer25036876interactionPMC5753334
breast cancer26191181interactionPMC5753334
pre-eclampsia26722461interactionPMC5753334
breast cancer26275461interactionPMC5753334
glioma26649728interactionPMC5753334
lung adenocarcinoma20937273interactionPMC5753334
cervical cancer26400521expressionPMC5753334
proliferative vitreoretinopathy26241674expressionPMC5753334
gastric cancer26096073expressionPMC5753334
non-small cell lung cancer26131129expressionPMC5753334
non-small cell lung cancer22088988expressionPMC5753334
triple-negative breast cancer25996380expressionPMC5753334
hepatocelluar carcinoma16878148expressionPMC5753334
pancreatic cancer25811929expressionPMC5753334
pituitary adenoma24469926expressionPMC5753334
pancreatic cancer25481511expressionPMC5753334
glioma25613066expressionPMC5753334
non-small cell lung cancer12970751expressionPMC5753334
esophageal squamous cell carcinoma26406400expressionPMC5753334
laryngeal squamous cell carcinoma25257554expressionPMC5753334
endometrial stromal sarcoma16441420expressionPMC5753334
bladder cancer24006935expressionPMC5753334
cancer20711585expressionPMC5753334
cancer20864030expressionPMC5753334
cancer23660942expressionPMC5753334
decreased myogenesis23485710expressionPMC5753334
diabetes mellitus24436191expressionPMC5753334
hepatocelluar carcinoma17006932expressionPMC5753334
hepatocelluar carcinoma24183851expressionPMC5753334
lung adenocarcinoma19690017expressionPMC5753334
lung cancer24667321expressionPMC5753334
non-small cell lung cancer21550244expressionPMC5753334
non-small cell lung cancer21903344expressionPMC5753334
non-small cell lung cancer22817756expressionPMC5753334
osteosarcoma20951849expressionPMC5753334
small cell lung cancer22928560expressionPMC5753334
papillary thyroid carcinoma25997963expressionPMC5753334
neuroblastoma20149803expressionPMC5753334
lung cancer26137228expressionPMC5753334
laryngeal squamous cell carcinoma24817925expressionPMC5753334
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Level of interactionTypeTargetPMIDData source
DNA-TFregulationCREB20149803PMC5753334
RNA-ProteinbindingSR20797886PMC5753334
RNA-ProteinbindingSR proteins 20797886PMC5753334
RNA-ProteinregulationSR protein family20864030PMC5753334
RNA-ProteinregulationSRSF120864030PMC5753334
RNA-Proteinbindingp54nrb21444682PMC5753334
RNA-ProteinbindingPSF21444682PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
DNA-ProteinregulationPc222078878PMC5753334
RNA-ProteinregulationRNPS122355166PMC5753334
RNA-ProteinregulationSRm16022355166PMC5753334
RNA-ProteinregulationIBP16022355166PMC5753334
RNA-Proteinregulationpre-mRNA splicing factors23698766PMC5753334
RNA-DNAregulationBcl-225036876PMC5753334
RNA-DNAbindingSp1 and LTBP3 promoter25187517PMC5753334
regulationCisplatin and paclitaxel25257554PMC5753334
RNA-RNAregulationSiRNA25280565PMC5753334
RNA-ProteinregulationPI3K/AKT signaling pathway25431257PMC5753334
RNA-RNAregulationmiR-101 and miR-21725538231PMC5753334
RNA-ProteinregulationCCL525546229PMC5753334
RNA-ProteinregulationATM-CHK2 pathway25613496PMC5753334
RNA-ProteinregulationRANKL25817340PMC5753334
regulationPI3K-AKT pathway26191181PMC5753334
RNA-RNAregulationmiRNA-12426242259PMC5753334
RNA-ProteinbindingTDP-4326265046PMC5753334
RNA-RNAregulationhsa-miR-126275461PMC5753334
RNA-RNAregulationmiR-14526311052PMC5753334
DNA-ProteinregulationSp1/326352013PMC5753334
RNA-ProteinregulationEZH2 (enhancer of zeste homolog 2) and H3K27me326415832PMC5753334
DNA-RNAregulationmiR-21726415832PMC5753334
RNA-RNAbindingmiR-200s26461224PMC5753334
RNA-RNAregulationmiR-126482776PMC5753334
RNA-ProteinbindingEZH226516927PMC5753334
RNA-ProteinregulationN-cadherin, Vimentin, E-cadherin26522444PMC5753334
RNA-ProteinregulationZO-1, occludin and claudin-526619802PMC5753334
RNA-RNAregulationmiR-14026619802PMC5753334
regulationERK/MAPK signaling26649728PMC5753334
RNA-ProteinregulationSox2 and Nestin26649728PMC5753334
RNA-RNAregulationHsa-miR-126676637PMC5753334
RNA-Proteinregulationpro-apoptotic proteins including cleaved caspase-3, cleaved caspase-9 and cleaved poly (ADP-ribose) 26722461PMC5753334
RNA-DNAregulationPCDH1026871474PMC5753334
RNA-ProteinbindingEZH226871474PMC5753334
RNA-RNAbindingmiR-124 26918449PMC5753334
RNA-DNAregulationcyclin-dependent kinase 4 (CDK4)26918449PMC5753334
RNA-DNAregulationcdc4226926567PMC5753334
RNA-RNAbindingmiR-1 26926567PMC5753334

Conservation

Conserved in: 7 species
Not found in: 4 species
Most distant counterpart in: Marmoset
Conserved species: Chimp, Rhesus, Crab-eating macaque, Atys, Baboon, Green monkey, Marmoset
Not found in: Bonobo, Gorilla, Orangutan, Lemur
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Human

MSTRG.22374.97

Counterpart found

Chimp

TCONS_00024511

Exonic Identity 42%

Locus Identity 42%
Counterpart not found

Bonobo

Counterpart not found

Gorilla

Counterpart not found

Orangutan

Counterpart found

Rhesus

TCONS_00069424

Exonic Identity 11%

Locus Identity 57%
Counterpart found

MacacaFascicularis

TCONS_00104006

Exonic Identity 3%

Locus Identity 2%
Counterpart found

Atys

TCONS_00090725

Exonic Identity 0%

Locus Identity 53%
Counterpart found

Baboon

TCONS_00068209

Exonic Identity 0%

Locus Identity 0%
Counterpart found

GreenMonkey

TCONS_00000471

Exonic Identity 96%

Locus Identity 97%
Counterpart found

Marmoset

TCONS_00019232

Exonic Identity 75%

Locus Identity 73%
Counterpart not found

Lemur

MSTRG.22374.97

Human non-coding transcript

Open the region of interest in the ENSEMBL Browser

ENSEMBL Browser

Check the reference ENSEMBL
transcript ID

ENSEMBL Transcript

Open the region of interest in the UCSC Genome Browser

UCSC Genome Browser