Human non-coding transcript
| Relation to reference | Generic exonic overlap with a reference transcript |
| Reference ENSEMBL ID | ENST00000612781 |
| Reference alias | MALAT1 |
| Biotype of reference transcript | lincRNA |
| Reference Gene ID | ENSG00000251562 |
| Transcript ID | MSTRG.22375.56 |
| Chromosome | 11 |
| Start | 65499042 |
| Stop | 65504463 |
| Strand | + |
| Exons | 2 |
| Length | 4778 nt |
| Protein coding potential | Low |
| Sample ID | Sample type | Expression (TPM) |
|---|---|---|
| ENCSR000CTO | MCF-7 | 534.546974 |
| ENCSR000CTP | IMR-90 | 425.68873899999994 |
| ENCSR000CPS | K562 | 144.857032 |
| ENCSR000CTS | SK-N-SH | 50.903535 |
| ENCSR000CPN | SK-N-SH | 32.654383 |
| ENCSR611ZAL | K562 | 20.932585 |
| ENCSR648QFY | K562 | 20.254689000000003 |
| ENCSR000CPH | K562 | 15.020229999999998 |
| ENCSR000CTT | SK-N-SH | 14.551985 |
| ENCSR386YEV | K562 | 13.058755 |
| ENCSR000CQS | endothelial cell of umbilical vein | 12.731806 |
| ENCSR056QEW | K562 | 11.450938 |
| ENCSR000CPC | HepG2 | 11.299588 |
| ENCSR310FIS | MCF-7 | 10.640224 |
| ENCSR000COZ | endothelial cell of umbilical vein | 9.527642 |
| ENCSR000CPL | keratinocyte | 8.006476 |
| ENCSR961WVL | K562 | 7.594744 |
| ENCSR336DFS | K562 | 7.185105999999999 |
| ENCSR222LRL | K562 | 6.956214 |
| ENCSR000CPJ | keratinocyte | 6.273823999999999 |
| ENCSR074UZM | HepG2 | 5.549452 |
| ENCSR560AYQ | K562 | 5.488361 |
| ENCSR000COO | fibroblast of lung | 4.7807830000000004 |
| ENCSR000CTQ | IMR-90 | 4.763758 |
| ENCSR663WGC | mesenchymal stem cell | 4.684457 |
| ENCSR129RWD | K562 | 4.585437000000001 |
| ENCSR258VGD | K562 | 4.344469 |
| ENCSR275ZLF | mesenchymal stem cell | 4.253684 |
| ENCSR000AEG | GM12878 | 3.685921 |
| ENCSR000CPT | MCF-7 | 3.607501 |
| ENCSR000AEP | K562 | 3.598931 |
| ENCSR947OIM | K562 | 3.50936 |
| ENCSR000CTU | MCF-7 | 3.494042 |
| ENCSR382QKD | HepG2 | 3.4154739999999997 |
| ENCSR927TSP | K562 | 3.207058 |
| ENCSR246SOU | K562 | 3.205071 |
| ENCSR104OLN | HepG2 | 3.143615 |
| ENCSR244SIO | K562 | 3.013783 |
| ENCSR000COP | foreskin fibroblast | 2.900223 |
| ENCSR000CTR | SK-N-SH | 2.471905 |
| ENCSR112YTD | K562 | 2.42855 |
| ENCSR000COU | H1-hESC | 1.9476650000000002 |
| ENCSR067UNX | HT1080 | 1.916869 |
| ENCSR967QNT | K562 | 1.814345 |
| ENCSR813NZP | K562 | 1.769608 |
| ENCSR000AEN | K562 | 1.695728 |
| ENCSR594DNW | HepG2 | 1.568064 |
| ENCSR776SXA | HepG2 | 1.546557 |
| ENCSR450ENK | suprapubic skin | 1.43936 |
| ENCSR000CON | A549 | 1.435821 |
| ENCSR000CPE | HepG2 | 1.415016 |
| ENCSR000CQC | A549 | 1.382736 |
| ENCSR110HAA | HepG2 | 1.3461100000000001 |
| ENCSR267RHP | K562 | 1.317581 |
| ENCSR009PPI | HepG2 | 1.283167 |
| ENCSR701GSV | HepG2 | 1.198212 |
| ENCSR124KCF | HepG2 | 1.091782 |
| ENCSR637JLM | HepG2 | 1.068228 |
| ENCSR802HPM | Peyer's patch | 1.0402559999999998 |
| ENCSR306IOF | K562 | 1.027407 |
| ENCSR627NVU | K562 | 1.016794 |
| ENCSR976JGI | mesendoderm | 1.015493 |
| ENCSR670WQY | H1-hESC | 0.9939819999999999 |
| ENCSR957EEG | HepG2 | 0.9763959999999999 |
| ENCSR960MSV | HepG2 | 0.937578 |
| ENCSR000CPD | HepG2 | 0.9244399999999999 |
| ENCSR671WMH | subcutaneous adipose tissue | 0.916035 |
| ENCSR700BEW | mesendoderm | 0.871157 |
| ENCSR985KAT | HepG2 | 0.8637809999999999 |
| ENCSR831YGP | K562 | 0.832966 |
| ENCSR770OWW | K562 | 0.7434529999999999 |
| ENCSR952QDQ | K562 | 0.7245010000000001 |
| ENCSR000CQD | foreskin fibroblast | 0.717612 |
| ENCSR035SKV | gastroesophageal sphincter | 0.710187 |
| ENCSR000AEO | K562 | 0.6999850000000001 |
| ENCSR572FFX | K562 | 0.684189 |
| ENCSR153GKS | HepG2 | 0.666794 |
| ENCSR330YOU | HepG2 | 0.653488 |
| ENCSR597XHH | HepG2 | 0.651455 |
| ENCSR624OUI | K562 | 0.640159 |
| ENCSR000CQH | endothelial cell of umbilical vein | 0.637195 |
| ENCSR504NIU | subcutaneous adipose tissue | 0.613846 |
| ENCSR997HCQ | HepG2 | 0.6059220000000001 |
| ENCSR234YMW | K562 | 0.601236 |
| ENCSR000CQL | K562 | 0.599546 |
| ENCSR660ETT | K562 | 0.591677 |
| ENCSR084SCN | K562 | 0.577533 |
| ENCSR000CPR | HeLa-S3 | 0.54552 |
| ENCSR494VSD | HepG2 | 0.522629 |
| ENCSR000CTM | A549 | 0.52107 |
| ENCSR000CQO | keratinocyte | 0.513636 |
| ENCSR991HIR | lower leg skin | 0.482675 |
| ENCSR695XOD | HepG2 | 0.481008 |
| ENCSR281KCL | HepG2 | 0.476767 |
| ENCSR586SEE | NCI-H460 | 0.45983 |
| ENCSR239BCO | K562 | 0.45968000000000003 |
| ENCSR648BSC | HepG2 | 0.444604 |
| ENCSR000CPF | HepG2 | 0.424016 |
| ENCSR840QOH | HepG2 | 0.41006400000000004 |
| ENCSR708VVE | subcutaneous adipose tissue | 0.402852 |
| ENCSR929PXS | HepG2 | 0.399271 |
| ENCSR678MVE | K562 | 0.385318 |
| ENCSR312SFA | HepG2 | 0.37692 |
| ENCSR155EZL | K562 | 0.37569 |
| ENCSR000CTL | A549 | 0.372856 |
| ENCSR800WIY | transverse colon | 0.334593 |
| ENCSR843LYF | K562 | 0.33381 |
| ENCSR231DXJ | K562 | 0.328832 |
| ENCSR454KYR | K562 | 0.320252 |
| ENCSR158KFO | omental fat pad | 0.317972 |
| ENCSR453HKS | K562 | 0.317938 |
| ENCSR874ZLI | K562 | 0.316523 |
| ENCSR898NWE | K562 | 0.314754 |
| ENCSR576GOW | HepG2 | 0.313215 |
| ENCSR967JPI | gastrocnemius medialis | 0.309278 |
| ENCSR577OVP | K562 | 0.305329 |
| ENCSR000CPK | keratinocyte | 0.30384099999999997 |
| ENCSR101OPF | K562 | 0.285926 |
| ENCSR653ZJF | transverse colon | 0.280038 |
| ENCSR166QLP | HT1080 | 0.271308 |
| ENCSR603TCV | HepG2 | 0.260558 |
| ENCSR827IXS | sigmoid colon | 0.258602 |
| ENCSR896MMU | HepG2 | 0.258383 |
| ENCSR648OSR | tibial nerve | 0.254748 |
| ENCSR000AEM | K562 | 0.254378 |
| ENCSR463JBR | CD4-positive helper T cell | 0.249683 |
| ENCSR810FHY | K562 | 0.240583 |
| ENCSR011BBS | HepG2 | 0.238552 |
| ENCSR146LBD | vagina | 0.23447800000000002 |
| ENCSR494UDF | K562 | 0.229449 |
| ENCSR334HNJ | K562 | 0.22640500000000002 |
| ENCSR769GES | HepG2 | 0.218496 |
| ENCSR434TEU | breast epithelium | 0.216635 |
| ENCSR861QKF | CD8-positive alpha-beta T cell | 0.21384899999999998 |
| ENCSR000CPX | fibroblast of lung | 0.206697 |
| ENCSR620PUP | K562 | 0.201978 |
| ENCSR605MFS | K562 | 0.201095 |
| ENCSR406SAW | upper lobe of left lung | 0.196927 |
| ENCSR952RRH | K562 | 0.192063 |
| ENCSR908ZAS | hepatocyte | 0.190749 |
| ENCSR042QTH | HepG2 | 0.185348 |
| ENCSR471RUK | stomach | 0.184425 |
| ENCSR544SAU | Peyer's patch | 0.179912 |
| ENCSR675KPR | K562 | 0.17465999999999998 |
| ENCSR194HVU | spleen | 0.166079 |
| ENCSR545MEZ | CD4-positive helper T cell | 0.15748199999999998 |
| ENCSR357XTU | natural killer cell | 0.15247 |
| ENCSR628JYB | K562 | 0.150703 |
| ENCSR849STR | K562 | 0.149802 |
| ENCSR000CQM | K562 | 0.142702 |
| ENCSR858QEL | tibial nerve | 0.141347 |
| ENCSR448DCX | urinary bladder | 0.139652 |
| ENCSR000AFG | skin of body | 0.13263 |
| ENCSR043RSE | H1-hESC | 0.13006099999999998 |
| ENCSR067GHD | HepG2 | 0.126203 |
| ENCSR900SGE | spleen | 0.12549200000000002 |
| ENCSR678TMV | gastrocnemius medialis | 0.12457599999999999 |
| ENCSR253DCB | K562 | 0.117094 |
| ENCSR000CPG | K562 | 0.11464200000000001 |
| ENCSR094VRQ | breast epithelium | 0.11247599999999999 |
| ENCSR000AHH | heart | 0.106294 |
| ENCSR839ZDH | upper lobe of left lung | 0.10603800000000001 |
| ENCSR346DZQ | K562 | 0.09705599999999999 |
| ENCSR000COY | skeletal muscle myoblast | 0.096992 |
| ENCSR000CUJ | fibroblast of the aortic adventitia | 0.090782 |
| ENCSR000CQI | HeLa-S3 | 0.09045700000000001 |
| ENCSR000AFI | stomach | 0.084385 |
| ENCSR052FJA | smooth muscle cell | 0.081845 |
| ENCSR000AEZ | heart | 0.08175700000000001 |
| ENCSR610VTA | HepG2 | 0.081278 |
| ENCSR857WJK | sigmoid colon | 0.076661 |
| ENCSR485WBR | gastroesophageal sphincter | 0.076025 |
| ENCSR000CQF | GM12878 | 0.072599 |
| ENCSR182CBU | esophagus muscularis mucosa | 0.071297 |
| ENCSR000CQA | K562 | 0.070111 |
| ENCSR729CAZ | omental fat pad | 0.06984299999999999 |
| ENCSR169QQW | K562 | 0.069781 |
| ENCSR000AFN | uterus | 0.068036 |
| ENCSR000AFJ | temporal lobe | 0.060479 |
| ENCSR968BBQ | HepG2 | 0.059183000000000006 |
| ENCSR306EIU | K562 | 0.056414 |
| ENCSR995JXE | neural cell | 0.055728999999999994 |
| ENCSR504QMK | right lobe of liver | 0.053439 |
| ENCSR837ZLY | thoracic aorta | 0.053089 |
| ENCSR379YAE | cardiac muscle cell | 0.052733 |
| ENCSR904CJQ | K562 | 0.052421 |
| ENCSR201WVA | SK-MEL-5 | 0.050924000000000004 |
| ENCSR713OLV | HepG2 | 0.047171 |
| ENCSR444WHQ | skeletal muscle myoblast | 0.046542 |
| ENCSR878EUT | glomerular endothelial cell | 0.045941 |
| ENCSR313COD | upper lobe of left lung | 0.045658 |
| ENCSR000CPI | keratinocyte | 0.04356 |
| ENCSR373BDG | kidney epithelial cell | 0.04249 |
| ENCSR837QDN | HepG2 | 0.042129 |
| ENCSR291DJH | SK-MEL-5 | 0.04023 |
| ENCSR113HQM | uterus | 0.038576 |
| ENCSR504VXC | A375 | 0.038211 |
| ENCSR000AFB | liver | 0.036948 |
| ENCSR136WGP | SK-N-DZ | 0.035684 |
| ENCSR000AAS | smooth muscle cell of trachea | 0.035498 |
| ENCSR305XWT | HepG2 | 0.034667 |
| ENCSR841ADZ | ovary | 0.034476 |
| ENCSR669KQU | SK-MEL-5 | 0.032997000000000005 |
| ENCSR000CVT | GM12878 | 0.031301 |
| ENCSR721MXZ | K562 | 0.030907999999999998 |
| ENCSR696SMK | M059J | 0.029965 |
| ENCSR000CUE | articular chondrocyte of knee joint | 0.028576999999999998 |
| ENCSR754WLW | adrenal gland | 0.027567 |
| ENCSR000AFE | parietal lobe | 0.02557 |
| ENCSR527SSD | foreskin keratinocyte | 0.023497 |
| ENCSR000AFA | metanephros | 0.023212 |
| ENCSR000CTK | IMR-90 | 0.021945 |
| ENCSR000CUI | skeletal muscle satellite cell | 0.021391999999999998 |
| ENCSR995JMS | HepG2 | 0.019528999999999998 |
| ENCSR529JNJ | K562 | 0.018922 |
| ENCSR000AEU | liver | 0.018248 |
| ENCSR000AAV | uterine smooth muscle cell | 0.017959 |
| ENCSR000AAA | aortic smooth muscle cell | 0.017830000000000002 |
| ENCSR000AFH | spinal cord | 0.015375999999999999 |
| ENCSR016IDR | HepG2 | 0.014394999999999998 |
| ENCSR000CPM | fibroblast of lung | 0.013007 |
| ENCSR000CUN | mammary epithelial cell | 0.012681 |
| ENCSR712CSN | K562 | 0.012047 |
| ENCSR000AEV | urinary bladder | 0.01123 |
| ENCSR000CUK | thoracic aorta endothelial cell | 0.01108 |
| ENCSR000AAQ | renal cortical epithelial cell | 0.010578 |
| ENCSR376FGR | HepG2 | 0.010567 |
| ENCSR000AAN | smooth muscle cell of the pulmonary artery | 0.009616 |
| ENCSR000CUF | osteoblast | 0.009096 |
| ENCSR741YCA | HepG2 | 0.008919 |
| ENCSR000AFD | occipital lobe | 0.007923999999999999 |
| ENCSR000CTX | pericyte cell | 0.007863 |
| ENCSR000AFK | thyroid gland | 0.006862999999999999 |
| ENCSR000CUQ | melanocyte of skin | 0.0062759999999999995 |
| ENCSR364GRM | HepG2 | 0.006214 |
| ENCSR424JSU | HepG2 | 0.0057810000000000005 |
| ENCSR853ZJS | HepG2 | 0.005713 |
| ENCSR000AEY | frontal cortex | 0.005186 |
| ENCSR000AAI | dermis blood vessel endothelial cell | 0.004997 |
| ENCSR689MIY | HepG2 | 0.0048130000000000004 |
| ENCSR000AAL | nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa | 0.0045850000000000005 |
| ENCSR000CUD | mesenchymal stem cell of the bone marrow | 0.004490999999999999 |
| ENCSR517JDK | HepG2 | 0.004425 |
| ENCSR355OQC | HepG2 | 0.004313 |
| ENCSR040WAK | HepG2 | 0.004227000000000001 |
| ENCSR538QOG | HepG2 | 0.004131 |
| ENCSR792CBM | K562 | 0.003988 |
| ENCSR342EDG | K562 | 0.003894 |
| ENCSR527IVX | K562 | 0.0035960000000000002 |
| ENCSR634KBO | K562 | 0.003303 |
| ENCSR921KDS | K562 | 0.003179 |
| ENCSR532ZPP | HepG2 | 0.0029879999999999998 |
| ENCSR629RUG | HepG2 | 0.002604 |
| ENCSR222ABK | K562 | 0.002136 |
| ENCSR000COQ | GM12878 | 0.002054 |
| ENCSR230ORC | HepG2 | 0.0017239999999999998 |
| ENCSR620HAA | HepG2 | 0.001605 |
| ENCSR000CQP | SK-N-SH | 0.001485 |
| ENCSR154OBA | K562 | 0.001457 |
| ENCSR000CUM | subcutaneous preadipocyte | 0.001408 |
| ENCSR000CUL | fibroblast of villous mesenchyme | 0.001407 |
| ENCSR193FFA | HepG2 | 0.001394 |
| ENCSR182GKG | HepG2 | 0.001165 |
| ENCSR667PLJ | K562 | 0.0009449999999999999 |
| ENCSR000CQB | MCF-7 | 0.00091 |
| ENCSR134JRE | K562 | 0.000859 |
| ENCSR944FLL | CD8-positive alpha-beta T cell | 0.000752 |
| ENCSR599UDS | K562 | 0.000729 |
| ENCSR691IVR | HepG2 | 0.0006230000000000001 |
| ENCSR079IPT | K562 | 0.000502 |
| ENCSR000COV | H1-hESC | 0.000479 |
| ENCSR906RHU | K562 | 0.00047300000000000006 |
| ENCSR372UWV | HepG2 | 0.000342 |
| ENCSR910ECL | HepG2 | 0.000312 |
| ENCSR090UMI | HepG2 | 0.000266 |
| ENCSR984CLJ | K562 | 0.00024900000000000004 |
| ENCSR345VVZ | K562 | 0.00023999999999999998 |
| ENCSR000CPO | GM12878 | 0.00023799999999999998 |
| ENCSR004OSI | HepG2 | 0.00021600000000000002 |
| ENCSR518JXY | HepG2 | 0.000204 |
| ENCSR066VOO | K562 | 0.000204 |
| ENCSR269HQA | K562 | 0.00018700000000000002 |
| ENCSR977XUX | neural stem progenitor cell | 0.000136 |
| ENCSR366FFV | HepG2 | 0.000127 |
| ENCSR164TLB | K562 | 0.000122 |
| ENCSR052IYH | HepG2 | 0.00011999999999999999 |
| ENCSR060IWW | HepG2 | 0.00010800000000000001 |
| ENCSR313CHR | HepG2 | 0.000102 |
| ENCSR744PAQ | HepG2 | 9e-05 |
| ENCSR023HWI | K562 | 8.499999999999999e-05 |
| ENCSR081IAO | HepG2 | 7.6e-05 |
| ENCSR341PZW | K562 | 6.2e-05 |
| ENCSR070LJO | HepG2 | 5.9e-05 |
| ENCSR000COX | mammary epithelial cell | 5.3e-05 |
| ENCSR079LMZ | K562 | 4.6e-05 |
| ENCSR309HXK | HepG2 | 4e-05 |
| ENCSR542ESY | HepG2 | 4e-05 |
| ENCSR943LIB | K562 | 3.7e-05 |
| ENCSR392HSJ | K562 | 3.3e-05 |
| ENCSR117WLY | K562 | 3.1e-05 |
| ENCSR771QMJ | HepG2 | 2.9999999999999997e-05 |
| ENCSR829EFL | K562 | 2.8000000000000003e-05 |
| ENCSR174OYC | K562 | 2.8000000000000003e-05 |
| ENCSR807ODB | HepG2 | 2.5e-05 |
| ENCSR182DAW | HepG2 | 2.4e-05 |
| ENCSR613SLA | foreskin keratinocyte | 2.4e-05 |
| ENCSR815JDY | HepG2 | 2.4e-05 |
| ENCSR555LCE | K562 | 2.4e-05 |
| ENCSR958KSY | HepG2 | 2.3e-05 |
| ENCSR629EWX | K562 | 2.3e-05 |
| ENCSR269ZAO | HepG2 | 1.9e-05 |
| ENCSR861ENA | HepG2 | 1.8e-05 |
| ENCSR330KHN | HepG2 | 1.3000000000000001e-05 |
| ENCSR331DUD | K562 | 1.1e-05 |
| ENCSR529MBZ | K562 | 1.1e-05 |
| ENCSR256PLH | K562 | 1.1e-05 |
| ENCSR770LYW | K562 | 1e-05 |
| ENCSR251ABP | K562 | 1e-05 |
| ENCSR000YYN | K562 | 1e-05 |
| ENCSR237YZT | HepG2 | 9e-06 |
| ENCSR708GKW | HepG2 | 8e-06 |
| ENCSR300QFQ | K562 | 7.000000000000001e-06 |
| ENCSR685JXU | HepG2 | 5e-06 |
| ENCSR450VQO | HepG2 | 5e-06 |
| ENCSR904BCZ | K562 | 4e-06 |
| ENCSR573UBF | HepG2 | 4e-06 |
| ENCSR000AEF | GM12878 | 4e-06 |
| ENCSR694LKY | K562 | 4e-06 |
| ENCSR143UET | K562 | 3e-06 |
| ENCSR561CBC | K562 | 3e-06 |
| ENCSR478FJK | HepG2 | 2e-06 |
| ENCSR961YAG | K562 | 2e-06 |
| ENCSR916WOI | K562 | 2e-06 |
| ENCSR778AJO | HepG2 | 2e-06 |
| ENCSR246RRQ | HepG2 | 2e-06 |
| ENCSR148MQK | HepG2 | 2e-06 |
| ENCSR781YNI | HepG2 | 2e-06 |
| ENCSR422JMS | HepG2 | 1e-06 |
| ENCSR064DXG | HepG2 | 1e-06 |
| ENCSR152IWT | K562 | 1e-06 |
| ENCSR777EDL | K562 | 1e-06 |
| ENCSR000CQQ | H1-hESC | 1e-06 |
| ENCSR448JAM | K562 | 1e-06 |
| ENCSR572EET | neural stem progenitor cell | 1e-06 |
>MSTRG.22375.56
GGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAGATAGAGATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATATGAAGACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGGTTGAGATGAAGCTTCTTCATGGAGTAAAAAATGTATTTAAAAGAAAATTGAGAGAAAGGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAATAGAGAAGATAGGGAAATTAGAAGATAAAAACATACTTTTAGAAGAAAAAAGATAAATTTAAACCTGAAAAGTAGGAAGCAGAAGAAAAAAGACAAGCTAGGAAACAAAAAGCTAAGGGCAAAATGTACAAACTTAGAAGAAAATTGGAAGATAGAAACAAGATAGAAAATGAAAATATTGTCAAGAGTTTCAGATAGAAAATGAAAAACAAGCTAAGACAAGTATTGGAGAAGTATAGAAGATAGAAAAATATAAAGCCAAAAATTGGATAAAATAGCACTGAAAAAATGAGGAAATTATTGGTAACCAATTTATTTTAAAAGCCCATCAATTTAATTTCTGGTGGTGCAGAAGTTAGAAGGTAAAGCTTGAGAAGATGAGGGTGTTTACGTAGACCAGAACCAATTTAGAAGAATACTTGAAGCTAGAAGGGGAAGTTGGTTAAAAATCACATCAAAAAGCTACTAAAAGGACTGGTGTAATTTAAAAAAAACTAAGGCAGAAGGCTTTTGGAAGAGTTAGAAGAATTTGGAAGGCCTTAAATATAGTAGCTTAGTTTGAAAAATGTGAAGGACTTTCGTAACGGAAGTAATTCAAGATCAAGAGTAATTACCAACTTAATGTTTTTGCATTGGACTTTGAGTTAAGATTATTTTTTAAATCCTGAGGACTAGCATTAATTGACAGCTGACCCAGGTGCTACACAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAAGCTAGGAAGAAGGAAGGAGCGCTAACGATTTGGTGGTGAAGCTAGGAAAAAGGATTCCAGGAAGGAGCGAGTGCAATTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAGTGGTTGGTAAAAATCCGTGAGGTCGGCAATATGTTGTTTTTCTGGAACTTACTTATGGTAACCTTTTATTTATTTTCTAATATAATGGGGGAGTTTCGTACTGAGGTGTAAAGGGATTTATATGGGGACGTAGGCCGATTTCCGGGTGTTGTAGGTTTCTCTTTTTCAGGCTTATACTCATGAATCTTGTCTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATAGTAGATGGCAAGTTTGTGGGTTTTTTTTTTTTACACGAATTTGAGGAAAACCAAATGAATTTGATAGCCAAATTGAGACAATTTCAGCAAATCTGTAAGCAGTTTGTATGTTTAGTTGGGGTAATGAAGTATTTCAGTTTTGTGAATAGATGACCTGTTTTTACTTCCTCACCCTGAATTCGTTTTGTAAATGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGTTTTCAGTATTTTTTTTTGTGGGGGTGGGGGCAAAATATGTTTTCAGTTCTTTTTCCCTTAGGTCTGTCTAGAATCCTAAAGGCAAATGACTCAAGGTGTAACAGAAAACAAGAAAATCCAATATCAGGATAATCAGACCACCACAGGTTTACAGTTTATAGAAACTAGAGCAGTTCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTAGTTACTCTTTTTTCCCCCCACCCCCTTAATCAGACTTTAAAAGTGCTTAACCCCTTAAACTTGTTATTTTTTACTTGAAGCATTTTGGGATGGTCTTAACAGGGAAGAGAGAGGGTGGGGGAGAAAATGTTTTTTTCTAAGATTTTCCACAGATGCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAGTGTACCGCTGTGCTGTTGGCACGAACACCTTCAGGGACTGGAGCTGCTTTTATCCTTGGAAGAGTATTCCCAGTTGAAGCTGAAAAGTACAGCACAGTGCAGCTTTGGTTCATATTCAGTCATCTCAGGAGAACTTCAGAAGAGCTTGAGTAGGCCAAATGTTGAAGTTAAGTTTTCCAATAATGTGACTTCTTAAAAGTTTTATTAAAGGGGAGGGGCAAATATTGGCAATTAGTTGGCAGTGGCCTGTTACGGTTGGGATTGGTGGGGTGGGTTTAGGTAATTGTTTAGTTTATGATTGCAGATAAACTCATGCCAGAGAACTTAAAGTCTTAGAATGGAAAAAGTAAAGAAATATCAACTTCCAAGTTGATAACATCTTCTGAGTCATAACCAGCCTGGCAGTATGATGGCCTAGATGCAGAGAAAACAGCTCCTTGGTGAATTGATAAGTAAAGGCAGAAAAGATTATATGTCATACCTCCATTGGGGAATAAGCATAACCCTGAGATTCTTACTACTGATGAGAACATTATCTGCATATGCCAAAAAATTTTAAGCAAATGAAAGCTACCAATTTAAAGTTACGGAATCTACCATTTTAAAGTTAATTGCTTGTCAAGCTATAACCACAAAAATAATGAATTGATGAGAAATACAATGAAGAGGCAATGTCCATCTCAAAATACTGCTTTTACAAAAGCAGAATAAAAGCGAAAAGAAATGAAAATGTTACACTACATTAATCCTGGAATAAAAGAAGCCGAAATAAATGAGAGATGAGTTGGGATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAGACAGGTATCTCTTCGTTATCAGAAGAGTTGCTTCATTTCATCTGGGAGCAGAAAACAGCAGGCAGCTGTTAACAGATAAGTTTAACTTGCATCTGCAGTATTGCATGTTAGGGATAAGTGCTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCTAGGGGATTTCAGGATTGAGAAATTTTTCCATCGAGCCTTTTTAAAATTGTAGGACTTGTTCCTGTGGGCTTCAGTGATGGGATAGTACACTTCACTCAGAGGCATTTGCATCTTTAAATAATTTCTTAAAAGCCTCTAAAGTGATCAGTGCCTTGATGCCAACTAAGGAAATTTGTTTAGCATTGAATCTCTGAAGGCTCTATGAAAGGAATAGCATGATGTGCTGTTAGAATCAGATGTTACTGCTAAAATTTACATGTTGTGATGTAAATTGTGTAGAAAACCATTAAATCATTCAAAATAATAAACTATTTTTATTAGAGAATGTATACTTTTAGAAAGCTGTCTCCTTATTTAAATAAAATAGTGTTTGTCTGTAGTTCAGTGTTGGGGCAATCTTGGGGGGGATTCTTCTCTAATCTTTCAGAAACTTTGTCTGCGAACACTCTTTAATGGACCAGATCAGGATTTGAGCGGAAGAACGAATGTAACTTTAAGGCAGGAAAGACAAATTTTATTCTTCATAAAGTGATGAGCATATAATAATTCCAGGCACATGGCAATAGAGGCCCTCTAAATAAGGAATAAATAACCTCTTAGACAGGTGGGAGATTATGATCAGAGTAAAAGGTAATTACACATTTTATTTCCAGAAAGTCAGGGGTCTATAAATTGACAGTGATTAGAGTAATACTTTTTCACATTTCCAAAGTTTGCATGTTAACTTTAAATGCTTACAATCTTAGAGTGGTAGGCAATGTTTTACACTATTGACCTTATATAGGGAAGGGAGGGGGTGCCTGTGGGGTTTTAAAGAATTTTCCTTTGCAGAGGCATTTCATCCTTCATGAAGCCATTCAGGATTTTGAATTGCATATGAGTGCTTGGCTCTTCCTTCTGTTCTAGTGAGTGTATGAGACCTTGCAGTGAGTTTATCAGCATACTCAAAATTTTTTTCCTGGAATTTGGAGGGATGGGAGGAGGGGGTGGGGCTTACTTGTTGTAGCTTTTTTTTTTTTTACAGACTTCACAGAGAATGCAGTTGTCTTGACTTCAGGTCTGTCTGTTCTGTTGGCAAGTAAATGCAGTACTGTTCTGATCCCGCTGCTATTAGAATGCATTGTGAAACGACTGGAGTATGATTAAAAGTTGTGTTCCCCAA
| Disease | PMID | Dysfunction_type | Data source |
| gallbladder cancer | 27420766 | expression | PMC6372806 |
| gastric cancer | 27887846 | expression | PMC6372806 |
| renal cell carcinoma | 25480417 | expression | PMC6372806 |
| gastric cancer | 28942451 | regulated | PMC6372806 |
| endometrial cancer | 27693631 | expression | PMC6372806 |
| esophageal cancer | 25613496 | regulated | PMC6372806 |
| osteosarcoma | 25431257 | regulated | PMC6372806 |
| 25773124 | PMC6372806 | ||
| hepatocellular carcinoma | 28469957 | expression | PMC6372806 |
| osteosarcoma | 28346809 | expression | PMC6372806 |
| renal cell carcinoma | 25600645 | expression | PMC6372806 |
| 28535533 | expression | PMC6372806 | |
| bladder cancer | 24449823 | expression | PMC6372806 |
| gastric cancer | 27259812 | expression | PMC6372806 |
| breast cancer | 28915533 | expression | PMC6372806 |
| breast cancer | 26917489 | regulated | PMC6372806 |
| 26335021 | PMC6372806 | ||
| gastric cancer | 25280565 | expression | PMC6372806 |
| hepatocellular carcinoma | 21678027 | expression | PMC6372806 |
| colorectal cancer | 25025966 | expression | PMC6372806 |
| cholangiocarcinoma | 28059437 | expression | PMC6372806 |
| multiple myeloma | 28295550 | expression | PMC6372806 |
| tongue cancer | 28260102 | expression | PMC6372806 |
| glioma | 26619802 | expression | PMC6372806 |
| cervical cancer | 26242259 | expression | PMC6372806 |
| colorectal cancer | 25446987 | expression | PMC6372806 |
| mantle cell lymphoma | 27998273 | expression | PMC6372806 |
| cervical cancer | 26798987 | expression | PMC6372806 |
| colorectal cancer | 28069878 | expression | PMC6372806 |
| thyroid cancer | 27470543 | expression | PMC6372806 |
| bladder cancer | 28648755 | expression | PMC6372806 |
| oral squamous cell carcinoma | 28926115 | expression | PMC6372806 |
| hepatocellular carcinoma | 28543721 | expression | PMC6372806 |
| prostate cancer | 23845456 | expression | PMC6372806 |
| gastric cancer | 28276823 | expression | PMC6372806 |
| bladder cancer | 23153939 | expression | PMC6372806 |
| non-small-cell lung cancer | 25217850 | expression | PMC6372806 |
| renal cell carcinoma | 27655020 | expression | PMC6372806 |
| choriocarcinoma | 29096355 | expression | PMC6372806 |
| oral squamous cell carcinoma | 26522444 | expression | PMC6372806 |
| breast cancer | 27197265 | expression | PMC6372806 |
| lung cancer | 23243023 | expression | PMC6372806 |
| hypertension | 28056547 | expression | PMC6372806 |
| hepatocellular carcinoma | 24468535 | expression | PMC6372806 |
| pancreatic cancer | 25269958 | expression | PMC6372806 |
| osteosarcoma | 26575981 | expression | PMC6372806 |
| breast cancer | 26676637 | expression | PMC6372806 |
| thyroid cancer | 28543663 | expression | PMC6372806 |
| hepatocellular carcinoma | 28720061 | expression | PMC6372806 |
| multiple myeloma | 25187517 | expression | PMC6372806 |
| tongue cancer | 27586393 | expression | PMC6372806 |
| gastric cancer | 28268166 | expression | PMC6372806 |
| calcific aortic valve disease | 28522163 | expression | PMC6372806 |
| esophageal cancer | 26493997 | expression | PMC6372806 |
| pancreatic cancer | 28701723 | expression | PMC6372806 |
| osteosarcoma | 28098894 | expression | PMC6372806 |
| liver fibrosis | 26435214 | expression | PMC6372806 |
| endometrial cancer | 25085246 | regulated | PMC6372806 |
| nasopharyngeal carcinoma | 27584791 | regulated | PMC6372806 |
| esophageal cancer | 27935117 | expression | PMC6372806 |
| colorectal cancer | 29436635 | expression | PMC6372806 |
| lung cancer | 28615056 | regulated | PMC6372806 |
| esophageal cancer | 27470544 | expression | PMC6372806 |
| glioma | 26938295 | expression | PMC6372806 |
| osteoarthritis | 28590075 | expression | PMC6372806 |
| hepatocellular carcinoma | 28722813 | expression | PMC6372806 |
| 29051139 | expression | PMC6372806 | |
| gallbladder cancer | 29058818 | expression | PMC6372806 |
| retinoblastoma | 29073720 | expression | PMC6372806 |
| diabetes mellitus | 29110299 | expression | PMC6372806 |
| 22487937 | expression | PMC6372806 | |
| multiple myeloma | 24583225 | expression | PMC6372806 |
| Parkinson's disease | 27021022 | expression | PMC6372806 |
| glioma | 29202181 | expression | PMC6372806 |
| osteosarcoma | 29204769 | expression | PMC6372806 |
| multiple myeloma | 29214735 | expression | PMC6372806 |
| non-small-cell lung cancer | 29215698 | expression | PMC6372806 |
| pancreatic cancer | 29215734 | expression | PMC6372806 |
| colon cancer | 29226325 | expression | PMC6372806 |
| 29227193 | expression | PMC6372806 | |
| 29258822 | expression | PMC6372806 | |
| 29274336 | expression | PMC6372806 | |
| osteosarcoma | 29290771 | expression | PMC6372806 |
| esophageal squamous cell carcinoma | 25538231 | regulation | PMC5753334 |
| gallbladder cancer | 24658096 | regulation | PMC5753334 |
| colon cancer | 25546229 | regulation | PMC5753334 |
| colorectal cancer | 25031737 | regulation | PMC5753334 |
| bladder cancer | 24373479 | regulation | PMC5753334 |
| breast cancer | 22492512 | regulation | PMC5753334 |
| breast cancer | 22996375 | regulation | PMC5753334 |
| breast cancer | 24499465 | regulation | PMC5753334 |
| cancer | 23463798 | regulation | PMC5753334 |
| cancer | 24757675 | regulation | PMC5753334 |
| tumor | 24721780 | regulation | PMC5753334 |
| prostate cancer | 23726266 | PMC5753334 | |
| cervical cancer | 24932303 | PMC5753334 | |
| pancreatic ductal adenocarcinoma | 24815433 | PMC5753334 | |
| nasopharyngeal carcinoma | 23688988 | PMC5753334 | |
| bladder cancer | 22722759 | PMC5753334 | |
| gastric cancer | 24857172 | PMC5753334 | |
| colorectal cancer | 24244343 | PMC5753334 | |
| melanoma | 24892958 | PMC5753334 | |
| breast cancer | 24525122 | PMC5753334 | |
| neuroblastoma | 24742640 | PMC5753334 | |
| prostate cancer | 22349460 | PMC5753334 | |
| osteosarcoma | 17660802 | PMC5753334 | |
| non-small cell lung cancer | 24313945 | PMC5753334 | |
| multiple myeloma | 25369863 | PMC5753334 | |
| breast cancer | 26918449 | PMC5753334 | |
| breast cancer | 26926567 | PMC5753334 | |
| gastric cancer | 26871474 | PMC5753334 | |
| acute myocardial infarction | 25035150 | PMC5753334 | |
| diabetes mellitus | 25356875 | PMC5753334 | |
| glioblastoma | 25772239 | PMC5753334 | |
| ovarian cancer | 24379988 | PMC5753334 | |
| esophageal squamous cell carcinoma | 27015363 | PMC5753334 | |
| colorectal cancer | 21503572 | PMC5753334 | |
| lung cancer | 22491206 | PMC5753334 | |
| hepatocelluar carcinoma | 22493738 | mutation | PMC5753334 |
| paraspeckle disintegration | 19188602 | mutation | PMC5753334 |
| renal cancer | 26461224 | interaction | PMC5753334 |
| nasopharyngeal carcinoma | 26482776 | interaction | PMC5753334 |
| cervical cancer | 26311052 | interaction | PMC5753334 |
| non-small cell lung cancer | 26265046 | interaction | PMC5753334 |
| lung cancer | 26415832 | interaction | PMC5753334 |
| "hepatocellular carcinoma | |||
| prostate cancer | 26516927 | interaction | PMC5753334 |
| cervical cancer | 20213048 | Interaction | PMC5753334 |
| non-small-cell lung cancer | 25036876 | interaction | PMC5753334 |
| breast cancer | 26191181 | interaction | PMC5753334 |
| pre-eclampsia | 26722461 | interaction | PMC5753334 |
| breast cancer | 26275461 | interaction | PMC5753334 |
| glioma | 26649728 | interaction | PMC5753334 |
| lung adenocarcinoma | 20937273 | interaction | PMC5753334 |
| cervical cancer | 26400521 | expression | PMC5753334 |
| proliferative vitreoretinopathy | 26241674 | expression | PMC5753334 |
| gastric cancer | 26096073 | expression | PMC5753334 |
| non-small cell lung cancer | 26131129 | expression | PMC5753334 |
| non-small cell lung cancer | 22088988 | expression | PMC5753334 |
| triple-negative breast cancer | 25996380 | expression | PMC5753334 |
| hepatocelluar carcinoma | 16878148 | expression | PMC5753334 |
| pancreatic cancer | 25811929 | expression | PMC5753334 |
| pituitary adenoma | 24469926 | expression | PMC5753334 |
| pancreatic cancer | 25481511 | expression | PMC5753334 |
| glioma | 25613066 | expression | PMC5753334 |
| non-small cell lung cancer | 12970751 | expression | PMC5753334 |
| esophageal squamous cell carcinoma | 26406400 | expression | PMC5753334 |
| laryngeal squamous cell carcinoma | 25257554 | expression | PMC5753334 |
| endometrial stromal sarcoma | 16441420 | expression | PMC5753334 |
| bladder cancer | 24006935 | expression | PMC5753334 |
| cancer | 20711585 | expression | PMC5753334 |
| cancer | 20864030 | expression | PMC5753334 |
| cancer | 23660942 | expression | PMC5753334 |
| decreased myogenesis | 23485710 | expression | PMC5753334 |
| diabetes mellitus | 24436191 | expression | PMC5753334 |
| hepatocelluar carcinoma | 17006932 | expression | PMC5753334 |
| hepatocelluar carcinoma | 24183851 | expression | PMC5753334 |
| lung adenocarcinoma | 19690017 | expression | PMC5753334 |
| lung cancer | 24667321 | expression | PMC5753334 |
| non-small cell lung cancer | 21550244 | expression | PMC5753334 |
| non-small cell lung cancer | 21903344 | expression | PMC5753334 |
| non-small cell lung cancer | 22817756 | expression | PMC5753334 |
| osteosarcoma | 20951849 | expression | PMC5753334 |
| small cell lung cancer | 22928560 | expression | PMC5753334 |
| papillary thyroid carcinoma | 25997963 | expression | PMC5753334 |
| neuroblastoma | 20149803 | expression | PMC5753334 |
| lung cancer | 26137228 | expression | PMC5753334 |
| laryngeal squamous cell carcinoma | 24817925 | expression | PMC5753334 |
| Level of interaction | Type | Target | PMID | Data source |
| DNA-TF | regulation | CREB | 20149803 | PMC5753334 |
| RNA-Protein | binding | SR | 20797886 | PMC5753334 |
| RNA-Protein | binding | SR proteins | 20797886 | PMC5753334 |
| RNA-Protein | regulation | SR protein family | 20864030 | PMC5753334 |
| RNA-Protein | regulation | SRSF1 | 20864030 | PMC5753334 |
| RNA-Protein | binding | p54nrb | 21444682 | PMC5753334 |
| RNA-Protein | binding | PSF | 21444682 | PMC5753334 |
| DNA-Protein | regulation | Pc2 | 22078878 | PMC5753334 |
| DNA-Protein | regulation | Pc2 | 22078878 | PMC5753334 |
| RNA-Protein | regulation | RNPS1 | 22355166 | PMC5753334 |
| RNA-Protein | regulation | SRm160 | 22355166 | PMC5753334 |
| RNA-Protein | regulation | IBP160 | 22355166 | PMC5753334 |
| RNA-Protein | regulation | pre-mRNA splicing factors | 23698766 | PMC5753334 |
| RNA-DNA | regulation | Bcl-2 | 25036876 | PMC5753334 |
| RNA-DNA | binding | Sp1 and LTBP3 promoter | 25187517 | PMC5753334 |
| regulation | Cisplatin and paclitaxel | 25257554 | PMC5753334 | |
| RNA-RNA | regulation | SiRNA | 25280565 | PMC5753334 |
| RNA-Protein | regulation | PI3K/AKT signaling pathway | 25431257 | PMC5753334 |
| RNA-RNA | regulation | miR-101 and miR-217 | 25538231 | PMC5753334 |
| RNA-Protein | regulation | CCL5 | 25546229 | PMC5753334 |
| RNA-Protein | regulation | ATM-CHK2 pathway | 25613496 | PMC5753334 |
| RNA-Protein | regulation | RANKL | 25817340 | PMC5753334 |
| regulation | PI3K-AKT pathway | 26191181 | PMC5753334 | |
| RNA-RNA | regulation | miRNA-124 | 26242259 | PMC5753334 |
| RNA-Protein | binding | TDP-43 | 26265046 | PMC5753334 |
| RNA-RNA | regulation | hsa-miR-1 | 26275461 | PMC5753334 |
| RNA-RNA | regulation | miR-145 | 26311052 | PMC5753334 |
| DNA-Protein | regulation | Sp1/3 | 26352013 | PMC5753334 |
| RNA-Protein | regulation | EZH2 (enhancer of zeste homolog 2) and H3K27me3 | 26415832 | PMC5753334 |
| DNA-RNA | regulation | miR-217 | 26415832 | PMC5753334 |
| RNA-RNA | binding | miR-200s | 26461224 | PMC5753334 |
| RNA-RNA | regulation | miR-1 | 26482776 | PMC5753334 |
| RNA-Protein | binding | EZH2 | 26516927 | PMC5753334 |
| RNA-Protein | regulation | N-cadherin, Vimentin, E-cadherin | 26522444 | PMC5753334 |
| RNA-Protein | regulation | ZO-1, occludin and claudin-5 | 26619802 | PMC5753334 |
| RNA-RNA | regulation | miR-140 | 26619802 | PMC5753334 |
| regulation | ERK/MAPK signaling | 26649728 | PMC5753334 | |
| RNA-Protein | regulation | Sox2 and Nestin | 26649728 | PMC5753334 |
| RNA-RNA | regulation | Hsa-miR-1 | 26676637 | PMC5753334 |
| RNA-Protein | regulation | pro-apoptotic proteins including cleaved caspase-3, cleaved caspase-9 and cleaved poly (ADP-ribose) | 26722461 | PMC5753334 |
| RNA-DNA | regulation | PCDH10 | 26871474 | PMC5753334 |
| RNA-Protein | binding | EZH2 | 26871474 | PMC5753334 |
| RNA-RNA | binding | miR-124 | 26918449 | PMC5753334 |
| RNA-DNA | regulation | cyclin-dependent kinase 4 (CDK4) | 26918449 | PMC5753334 |
| RNA-DNA | regulation | cdc42 | 26926567 | PMC5753334 |
| RNA-RNA | binding | miR-1 | 26926567 | PMC5753334 |
| Conserved in: | 10 species |
| Not found in: | 1 species |
| Most distant counterpart in: | Marmoset |
| Conserved species: | Chimp, Bonobo, Gorilla, Orangutan, Rhesus, Crab-eating macaque, Atys, Baboon, Green monkey, Marmoset |
| Not found in: | Lemur |
Human non-coding transcript
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ENSEMBL BrowserCheck the reference ENSEMBL
transcript ID
Open the region of interest in the UCSC Genome Browser