Human non-coding transcript
Relation to reference | Generic exonic overlap with a reference transcript |
Reference ENSEMBL ID | ENST00000612781 |
Reference alias | MALAT1 |
Biotype of reference transcript | lincRNA |
Reference Gene ID | ENSG00000251562 |
Transcript ID | MSTRG.22375.56 |
Chromosome | 11 |
Start | 65499042 |
Stop | 65504463 |
Strand | + |
Exons | 2 |
Length | 4778 nt |
Protein coding potential | Low |
Sample ID | Sample type | Expression (TPM) |
---|---|---|
ENCSR000CTO | MCF-7 | 534.546974 |
ENCSR000CTP | IMR-90 | 425.68873899999994 |
ENCSR000CPS | K562 | 144.857032 |
ENCSR000CTS | SK-N-SH | 50.903535 |
ENCSR000CPN | SK-N-SH | 32.654383 |
ENCSR611ZAL | K562 | 20.932585 |
ENCSR648QFY | K562 | 20.254689000000003 |
ENCSR000CPH | K562 | 15.020229999999998 |
ENCSR000CTT | SK-N-SH | 14.551985 |
ENCSR386YEV | K562 | 13.058755 |
ENCSR000CQS | endothelial cell of umbilical vein | 12.731806 |
ENCSR056QEW | K562 | 11.450938 |
ENCSR000CPC | HepG2 | 11.299588 |
ENCSR310FIS | MCF-7 | 10.640224 |
ENCSR000COZ | endothelial cell of umbilical vein | 9.527642 |
ENCSR000CPL | keratinocyte | 8.006476 |
ENCSR961WVL | K562 | 7.594744 |
ENCSR336DFS | K562 | 7.185105999999999 |
ENCSR222LRL | K562 | 6.956214 |
ENCSR000CPJ | keratinocyte | 6.273823999999999 |
ENCSR074UZM | HepG2 | 5.549452 |
ENCSR560AYQ | K562 | 5.488361 |
ENCSR000COO | fibroblast of lung | 4.7807830000000004 |
ENCSR000CTQ | IMR-90 | 4.763758 |
ENCSR663WGC | mesenchymal stem cell | 4.684457 |
ENCSR129RWD | K562 | 4.585437000000001 |
ENCSR258VGD | K562 | 4.344469 |
ENCSR275ZLF | mesenchymal stem cell | 4.253684 |
ENCSR000AEG | GM12878 | 3.685921 |
ENCSR000CPT | MCF-7 | 3.607501 |
ENCSR000AEP | K562 | 3.598931 |
ENCSR947OIM | K562 | 3.50936 |
ENCSR000CTU | MCF-7 | 3.494042 |
ENCSR382QKD | HepG2 | 3.4154739999999997 |
ENCSR927TSP | K562 | 3.207058 |
ENCSR246SOU | K562 | 3.205071 |
ENCSR104OLN | HepG2 | 3.143615 |
ENCSR244SIO | K562 | 3.013783 |
ENCSR000COP | foreskin fibroblast | 2.900223 |
ENCSR000CTR | SK-N-SH | 2.471905 |
ENCSR112YTD | K562 | 2.42855 |
ENCSR000COU | H1-hESC | 1.9476650000000002 |
ENCSR067UNX | HT1080 | 1.916869 |
ENCSR967QNT | K562 | 1.814345 |
ENCSR813NZP | K562 | 1.769608 |
ENCSR000AEN | K562 | 1.695728 |
ENCSR594DNW | HepG2 | 1.568064 |
ENCSR776SXA | HepG2 | 1.546557 |
ENCSR450ENK | suprapubic skin | 1.43936 |
ENCSR000CON | A549 | 1.435821 |
ENCSR000CPE | HepG2 | 1.415016 |
ENCSR000CQC | A549 | 1.382736 |
ENCSR110HAA | HepG2 | 1.3461100000000001 |
ENCSR267RHP | K562 | 1.317581 |
ENCSR009PPI | HepG2 | 1.283167 |
ENCSR701GSV | HepG2 | 1.198212 |
ENCSR124KCF | HepG2 | 1.091782 |
ENCSR637JLM | HepG2 | 1.068228 |
ENCSR802HPM | Peyer's patch | 1.0402559999999998 |
ENCSR306IOF | K562 | 1.027407 |
ENCSR627NVU | K562 | 1.016794 |
ENCSR976JGI | mesendoderm | 1.015493 |
ENCSR670WQY | H1-hESC | 0.9939819999999999 |
ENCSR957EEG | HepG2 | 0.9763959999999999 |
ENCSR960MSV | HepG2 | 0.937578 |
ENCSR000CPD | HepG2 | 0.9244399999999999 |
ENCSR671WMH | subcutaneous adipose tissue | 0.916035 |
ENCSR700BEW | mesendoderm | 0.871157 |
ENCSR985KAT | HepG2 | 0.8637809999999999 |
ENCSR831YGP | K562 | 0.832966 |
ENCSR770OWW | K562 | 0.7434529999999999 |
ENCSR952QDQ | K562 | 0.7245010000000001 |
ENCSR000CQD | foreskin fibroblast | 0.717612 |
ENCSR035SKV | gastroesophageal sphincter | 0.710187 |
ENCSR000AEO | K562 | 0.6999850000000001 |
ENCSR572FFX | K562 | 0.684189 |
ENCSR153GKS | HepG2 | 0.666794 |
ENCSR330YOU | HepG2 | 0.653488 |
ENCSR597XHH | HepG2 | 0.651455 |
ENCSR624OUI | K562 | 0.640159 |
ENCSR000CQH | endothelial cell of umbilical vein | 0.637195 |
ENCSR504NIU | subcutaneous adipose tissue | 0.613846 |
ENCSR997HCQ | HepG2 | 0.6059220000000001 |
ENCSR234YMW | K562 | 0.601236 |
ENCSR000CQL | K562 | 0.599546 |
ENCSR660ETT | K562 | 0.591677 |
ENCSR084SCN | K562 | 0.577533 |
ENCSR000CPR | HeLa-S3 | 0.54552 |
ENCSR494VSD | HepG2 | 0.522629 |
ENCSR000CTM | A549 | 0.52107 |
ENCSR000CQO | keratinocyte | 0.513636 |
ENCSR991HIR | lower leg skin | 0.482675 |
ENCSR695XOD | HepG2 | 0.481008 |
ENCSR281KCL | HepG2 | 0.476767 |
ENCSR586SEE | NCI-H460 | 0.45983 |
ENCSR239BCO | K562 | 0.45968000000000003 |
ENCSR648BSC | HepG2 | 0.444604 |
ENCSR000CPF | HepG2 | 0.424016 |
ENCSR840QOH | HepG2 | 0.41006400000000004 |
ENCSR708VVE | subcutaneous adipose tissue | 0.402852 |
ENCSR929PXS | HepG2 | 0.399271 |
ENCSR678MVE | K562 | 0.385318 |
ENCSR312SFA | HepG2 | 0.37692 |
ENCSR155EZL | K562 | 0.37569 |
ENCSR000CTL | A549 | 0.372856 |
ENCSR800WIY | transverse colon | 0.334593 |
ENCSR843LYF | K562 | 0.33381 |
ENCSR231DXJ | K562 | 0.328832 |
ENCSR454KYR | K562 | 0.320252 |
ENCSR158KFO | omental fat pad | 0.317972 |
ENCSR453HKS | K562 | 0.317938 |
ENCSR874ZLI | K562 | 0.316523 |
ENCSR898NWE | K562 | 0.314754 |
ENCSR576GOW | HepG2 | 0.313215 |
ENCSR967JPI | gastrocnemius medialis | 0.309278 |
ENCSR577OVP | K562 | 0.305329 |
ENCSR000CPK | keratinocyte | 0.30384099999999997 |
ENCSR101OPF | K562 | 0.285926 |
ENCSR653ZJF | transverse colon | 0.280038 |
ENCSR166QLP | HT1080 | 0.271308 |
ENCSR603TCV | HepG2 | 0.260558 |
ENCSR827IXS | sigmoid colon | 0.258602 |
ENCSR896MMU | HepG2 | 0.258383 |
ENCSR648OSR | tibial nerve | 0.254748 |
ENCSR000AEM | K562 | 0.254378 |
ENCSR463JBR | CD4-positive helper T cell | 0.249683 |
ENCSR810FHY | K562 | 0.240583 |
ENCSR011BBS | HepG2 | 0.238552 |
ENCSR146LBD | vagina | 0.23447800000000002 |
ENCSR494UDF | K562 | 0.229449 |
ENCSR334HNJ | K562 | 0.22640500000000002 |
ENCSR769GES | HepG2 | 0.218496 |
ENCSR434TEU | breast epithelium | 0.216635 |
ENCSR861QKF | CD8-positive alpha-beta T cell | 0.21384899999999998 |
ENCSR000CPX | fibroblast of lung | 0.206697 |
ENCSR620PUP | K562 | 0.201978 |
ENCSR605MFS | K562 | 0.201095 |
ENCSR406SAW | upper lobe of left lung | 0.196927 |
ENCSR952RRH | K562 | 0.192063 |
ENCSR908ZAS | hepatocyte | 0.190749 |
ENCSR042QTH | HepG2 | 0.185348 |
ENCSR471RUK | stomach | 0.184425 |
ENCSR544SAU | Peyer's patch | 0.179912 |
ENCSR675KPR | K562 | 0.17465999999999998 |
ENCSR194HVU | spleen | 0.166079 |
ENCSR545MEZ | CD4-positive helper T cell | 0.15748199999999998 |
ENCSR357XTU | natural killer cell | 0.15247 |
ENCSR628JYB | K562 | 0.150703 |
ENCSR849STR | K562 | 0.149802 |
ENCSR000CQM | K562 | 0.142702 |
ENCSR858QEL | tibial nerve | 0.141347 |
ENCSR448DCX | urinary bladder | 0.139652 |
ENCSR000AFG | skin of body | 0.13263 |
ENCSR043RSE | H1-hESC | 0.13006099999999998 |
ENCSR067GHD | HepG2 | 0.126203 |
ENCSR900SGE | spleen | 0.12549200000000002 |
ENCSR678TMV | gastrocnemius medialis | 0.12457599999999999 |
ENCSR253DCB | K562 | 0.117094 |
ENCSR000CPG | K562 | 0.11464200000000001 |
ENCSR094VRQ | breast epithelium | 0.11247599999999999 |
ENCSR000AHH | heart | 0.106294 |
ENCSR839ZDH | upper lobe of left lung | 0.10603800000000001 |
ENCSR346DZQ | K562 | 0.09705599999999999 |
ENCSR000COY | skeletal muscle myoblast | 0.096992 |
ENCSR000CUJ | fibroblast of the aortic adventitia | 0.090782 |
ENCSR000CQI | HeLa-S3 | 0.09045700000000001 |
ENCSR000AFI | stomach | 0.084385 |
ENCSR052FJA | smooth muscle cell | 0.081845 |
ENCSR000AEZ | heart | 0.08175700000000001 |
ENCSR610VTA | HepG2 | 0.081278 |
ENCSR857WJK | sigmoid colon | 0.076661 |
ENCSR485WBR | gastroesophageal sphincter | 0.076025 |
ENCSR000CQF | GM12878 | 0.072599 |
ENCSR182CBU | esophagus muscularis mucosa | 0.071297 |
ENCSR000CQA | K562 | 0.070111 |
ENCSR729CAZ | omental fat pad | 0.06984299999999999 |
ENCSR169QQW | K562 | 0.069781 |
ENCSR000AFN | uterus | 0.068036 |
ENCSR000AFJ | temporal lobe | 0.060479 |
ENCSR968BBQ | HepG2 | 0.059183000000000006 |
ENCSR306EIU | K562 | 0.056414 |
ENCSR995JXE | neural cell | 0.055728999999999994 |
ENCSR504QMK | right lobe of liver | 0.053439 |
ENCSR837ZLY | thoracic aorta | 0.053089 |
ENCSR379YAE | cardiac muscle cell | 0.052733 |
ENCSR904CJQ | K562 | 0.052421 |
ENCSR201WVA | SK-MEL-5 | 0.050924000000000004 |
ENCSR713OLV | HepG2 | 0.047171 |
ENCSR444WHQ | skeletal muscle myoblast | 0.046542 |
ENCSR878EUT | glomerular endothelial cell | 0.045941 |
ENCSR313COD | upper lobe of left lung | 0.045658 |
ENCSR000CPI | keratinocyte | 0.04356 |
ENCSR373BDG | kidney epithelial cell | 0.04249 |
ENCSR837QDN | HepG2 | 0.042129 |
ENCSR291DJH | SK-MEL-5 | 0.04023 |
ENCSR113HQM | uterus | 0.038576 |
ENCSR504VXC | A375 | 0.038211 |
ENCSR000AFB | liver | 0.036948 |
ENCSR136WGP | SK-N-DZ | 0.035684 |
ENCSR000AAS | smooth muscle cell of trachea | 0.035498 |
ENCSR305XWT | HepG2 | 0.034667 |
ENCSR841ADZ | ovary | 0.034476 |
ENCSR669KQU | SK-MEL-5 | 0.032997000000000005 |
ENCSR000CVT | GM12878 | 0.031301 |
ENCSR721MXZ | K562 | 0.030907999999999998 |
ENCSR696SMK | M059J | 0.029965 |
ENCSR000CUE | articular chondrocyte of knee joint | 0.028576999999999998 |
ENCSR754WLW | adrenal gland | 0.027567 |
ENCSR000AFE | parietal lobe | 0.02557 |
ENCSR527SSD | foreskin keratinocyte | 0.023497 |
ENCSR000AFA | metanephros | 0.023212 |
ENCSR000CTK | IMR-90 | 0.021945 |
ENCSR000CUI | skeletal muscle satellite cell | 0.021391999999999998 |
ENCSR995JMS | HepG2 | 0.019528999999999998 |
ENCSR529JNJ | K562 | 0.018922 |
ENCSR000AEU | liver | 0.018248 |
ENCSR000AAV | uterine smooth muscle cell | 0.017959 |
ENCSR000AAA | aortic smooth muscle cell | 0.017830000000000002 |
ENCSR000AFH | spinal cord | 0.015375999999999999 |
ENCSR016IDR | HepG2 | 0.014394999999999998 |
ENCSR000CPM | fibroblast of lung | 0.013007 |
ENCSR000CUN | mammary epithelial cell | 0.012681 |
ENCSR712CSN | K562 | 0.012047 |
ENCSR000AEV | urinary bladder | 0.01123 |
ENCSR000CUK | thoracic aorta endothelial cell | 0.01108 |
ENCSR000AAQ | renal cortical epithelial cell | 0.010578 |
ENCSR376FGR | HepG2 | 0.010567 |
ENCSR000AAN | smooth muscle cell of the pulmonary artery | 0.009616 |
ENCSR000CUF | osteoblast | 0.009096 |
ENCSR741YCA | HepG2 | 0.008919 |
ENCSR000AFD | occipital lobe | 0.007923999999999999 |
ENCSR000CTX | pericyte cell | 0.007863 |
ENCSR000AFK | thyroid gland | 0.006862999999999999 |
ENCSR000CUQ | melanocyte of skin | 0.0062759999999999995 |
ENCSR364GRM | HepG2 | 0.006214 |
ENCSR424JSU | HepG2 | 0.0057810000000000005 |
ENCSR853ZJS | HepG2 | 0.005713 |
ENCSR000AEY | frontal cortex | 0.005186 |
ENCSR000AAI | dermis blood vessel endothelial cell | 0.004997 |
ENCSR689MIY | HepG2 | 0.0048130000000000004 |
ENCSR000AAL | nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa | 0.0045850000000000005 |
ENCSR000CUD | mesenchymal stem cell of the bone marrow | 0.004490999999999999 |
ENCSR517JDK | HepG2 | 0.004425 |
ENCSR355OQC | HepG2 | 0.004313 |
ENCSR040WAK | HepG2 | 0.004227000000000001 |
ENCSR538QOG | HepG2 | 0.004131 |
ENCSR792CBM | K562 | 0.003988 |
ENCSR342EDG | K562 | 0.003894 |
ENCSR527IVX | K562 | 0.0035960000000000002 |
ENCSR634KBO | K562 | 0.003303 |
ENCSR921KDS | K562 | 0.003179 |
ENCSR532ZPP | HepG2 | 0.0029879999999999998 |
ENCSR629RUG | HepG2 | 0.002604 |
ENCSR222ABK | K562 | 0.002136 |
ENCSR000COQ | GM12878 | 0.002054 |
ENCSR230ORC | HepG2 | 0.0017239999999999998 |
ENCSR620HAA | HepG2 | 0.001605 |
ENCSR000CQP | SK-N-SH | 0.001485 |
ENCSR154OBA | K562 | 0.001457 |
ENCSR000CUM | subcutaneous preadipocyte | 0.001408 |
ENCSR000CUL | fibroblast of villous mesenchyme | 0.001407 |
ENCSR193FFA | HepG2 | 0.001394 |
ENCSR182GKG | HepG2 | 0.001165 |
ENCSR667PLJ | K562 | 0.0009449999999999999 |
ENCSR000CQB | MCF-7 | 0.00091 |
ENCSR134JRE | K562 | 0.000859 |
ENCSR944FLL | CD8-positive alpha-beta T cell | 0.000752 |
ENCSR599UDS | K562 | 0.000729 |
ENCSR691IVR | HepG2 | 0.0006230000000000001 |
ENCSR079IPT | K562 | 0.000502 |
ENCSR000COV | H1-hESC | 0.000479 |
ENCSR906RHU | K562 | 0.00047300000000000006 |
ENCSR372UWV | HepG2 | 0.000342 |
ENCSR910ECL | HepG2 | 0.000312 |
ENCSR090UMI | HepG2 | 0.000266 |
ENCSR984CLJ | K562 | 0.00024900000000000004 |
ENCSR345VVZ | K562 | 0.00023999999999999998 |
ENCSR000CPO | GM12878 | 0.00023799999999999998 |
ENCSR004OSI | HepG2 | 0.00021600000000000002 |
ENCSR518JXY | HepG2 | 0.000204 |
ENCSR066VOO | K562 | 0.000204 |
ENCSR269HQA | K562 | 0.00018700000000000002 |
ENCSR977XUX | neural stem progenitor cell | 0.000136 |
ENCSR366FFV | HepG2 | 0.000127 |
ENCSR164TLB | K562 | 0.000122 |
ENCSR052IYH | HepG2 | 0.00011999999999999999 |
ENCSR060IWW | HepG2 | 0.00010800000000000001 |
ENCSR313CHR | HepG2 | 0.000102 |
ENCSR744PAQ | HepG2 | 9e-05 |
ENCSR023HWI | K562 | 8.499999999999999e-05 |
ENCSR081IAO | HepG2 | 7.6e-05 |
ENCSR341PZW | K562 | 6.2e-05 |
ENCSR070LJO | HepG2 | 5.9e-05 |
ENCSR000COX | mammary epithelial cell | 5.3e-05 |
ENCSR079LMZ | K562 | 4.6e-05 |
ENCSR309HXK | HepG2 | 4e-05 |
ENCSR542ESY | HepG2 | 4e-05 |
ENCSR943LIB | K562 | 3.7e-05 |
ENCSR392HSJ | K562 | 3.3e-05 |
ENCSR117WLY | K562 | 3.1e-05 |
ENCSR771QMJ | HepG2 | 2.9999999999999997e-05 |
ENCSR829EFL | K562 | 2.8000000000000003e-05 |
ENCSR174OYC | K562 | 2.8000000000000003e-05 |
ENCSR807ODB | HepG2 | 2.5e-05 |
ENCSR182DAW | HepG2 | 2.4e-05 |
ENCSR613SLA | foreskin keratinocyte | 2.4e-05 |
ENCSR815JDY | HepG2 | 2.4e-05 |
ENCSR555LCE | K562 | 2.4e-05 |
ENCSR958KSY | HepG2 | 2.3e-05 |
ENCSR629EWX | K562 | 2.3e-05 |
ENCSR269ZAO | HepG2 | 1.9e-05 |
ENCSR861ENA | HepG2 | 1.8e-05 |
ENCSR330KHN | HepG2 | 1.3000000000000001e-05 |
ENCSR331DUD | K562 | 1.1e-05 |
ENCSR529MBZ | K562 | 1.1e-05 |
ENCSR256PLH | K562 | 1.1e-05 |
ENCSR770LYW | K562 | 1e-05 |
ENCSR251ABP | K562 | 1e-05 |
ENCSR000YYN | K562 | 1e-05 |
ENCSR237YZT | HepG2 | 9e-06 |
ENCSR708GKW | HepG2 | 8e-06 |
ENCSR300QFQ | K562 | 7.000000000000001e-06 |
ENCSR685JXU | HepG2 | 5e-06 |
ENCSR450VQO | HepG2 | 5e-06 |
ENCSR904BCZ | K562 | 4e-06 |
ENCSR573UBF | HepG2 | 4e-06 |
ENCSR000AEF | GM12878 | 4e-06 |
ENCSR694LKY | K562 | 4e-06 |
ENCSR143UET | K562 | 3e-06 |
ENCSR561CBC | K562 | 3e-06 |
ENCSR478FJK | HepG2 | 2e-06 |
ENCSR961YAG | K562 | 2e-06 |
ENCSR916WOI | K562 | 2e-06 |
ENCSR778AJO | HepG2 | 2e-06 |
ENCSR246RRQ | HepG2 | 2e-06 |
ENCSR148MQK | HepG2 | 2e-06 |
ENCSR781YNI | HepG2 | 2e-06 |
ENCSR422JMS | HepG2 | 1e-06 |
ENCSR064DXG | HepG2 | 1e-06 |
ENCSR152IWT | K562 | 1e-06 |
ENCSR777EDL | K562 | 1e-06 |
ENCSR000CQQ | H1-hESC | 1e-06 |
ENCSR448JAM | K562 | 1e-06 |
ENCSR572EET | neural stem progenitor cell | 1e-06 |
>MSTRG.22375.56
GGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAGATAGAGATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATATGAAGACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGGTTGAGATGAAGCTTCTTCATGGAGTAAAAAATGTATTTAAAAGAAAATTGAGAGAAAGGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAATAGAGAAGATAGGGAAATTAGAAGATAAAAACATACTTTTAGAAGAAAAAAGATAAATTTAAACCTGAAAAGTAGGAAGCAGAAGAAAAAAGACAAGCTAGGAAACAAAAAGCTAAGGGCAAAATGTACAAACTTAGAAGAAAATTGGAAGATAGAAACAAGATAGAAAATGAAAATATTGTCAAGAGTTTCAGATAGAAAATGAAAAACAAGCTAAGACAAGTATTGGAGAAGTATAGAAGATAGAAAAATATAAAGCCAAAAATTGGATAAAATAGCACTGAAAAAATGAGGAAATTATTGGTAACCAATTTATTTTAAAAGCCCATCAATTTAATTTCTGGTGGTGCAGAAGTTAGAAGGTAAAGCTTGAGAAGATGAGGGTGTTTACGTAGACCAGAACCAATTTAGAAGAATACTTGAAGCTAGAAGGGGAAGTTGGTTAAAAATCACATCAAAAAGCTACTAAAAGGACTGGTGTAATTTAAAAAAAACTAAGGCAGAAGGCTTTTGGAAGAGTTAGAAGAATTTGGAAGGCCTTAAATATAGTAGCTTAGTTTGAAAAATGTGAAGGACTTTCGTAACGGAAGTAATTCAAGATCAAGAGTAATTACCAACTTAATGTTTTTGCATTGGACTTTGAGTTAAGATTATTTTTTAAATCCTGAGGACTAGCATTAATTGACAGCTGACCCAGGTGCTACACAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAAGCTAGGAAGAAGGAAGGAGCGCTAACGATTTGGTGGTGAAGCTAGGAAAAAGGATTCCAGGAAGGAGCGAGTGCAATTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAGTGGTTGGTAAAAATCCGTGAGGTCGGCAATATGTTGTTTTTCTGGAACTTACTTATGGTAACCTTTTATTTATTTTCTAATATAATGGGGGAGTTTCGTACTGAGGTGTAAAGGGATTTATATGGGGACGTAGGCCGATTTCCGGGTGTTGTAGGTTTCTCTTTTTCAGGCTTATACTCATGAATCTTGTCTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATAGTAGATGGCAAGTTTGTGGGTTTTTTTTTTTTACACGAATTTGAGGAAAACCAAATGAATTTGATAGCCAAATTGAGACAATTTCAGCAAATCTGTAAGCAGTTTGTATGTTTAGTTGGGGTAATGAAGTATTTCAGTTTTGTGAATAGATGACCTGTTTTTACTTCCTCACCCTGAATTCGTTTTGTAAATGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGTTTTCAGTATTTTTTTTTGTGGGGGTGGGGGCAAAATATGTTTTCAGTTCTTTTTCCCTTAGGTCTGTCTAGAATCCTAAAGGCAAATGACTCAAGGTGTAACAGAAAACAAGAAAATCCAATATCAGGATAATCAGACCACCACAGGTTTACAGTTTATAGAAACTAGAGCAGTTCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTAGTTACTCTTTTTTCCCCCCACCCCCTTAATCAGACTTTAAAAGTGCTTAACCCCTTAAACTTGTTATTTTTTACTTGAAGCATTTTGGGATGGTCTTAACAGGGAAGAGAGAGGGTGGGGGAGAAAATGTTTTTTTCTAAGATTTTCCACAGATGCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAGTGTACCGCTGTGCTGTTGGCACGAACACCTTCAGGGACTGGAGCTGCTTTTATCCTTGGAAGAGTATTCCCAGTTGAAGCTGAAAAGTACAGCACAGTGCAGCTTTGGTTCATATTCAGTCATCTCAGGAGAACTTCAGAAGAGCTTGAGTAGGCCAAATGTTGAAGTTAAGTTTTCCAATAATGTGACTTCTTAAAAGTTTTATTAAAGGGGAGGGGCAAATATTGGCAATTAGTTGGCAGTGGCCTGTTACGGTTGGGATTGGTGGGGTGGGTTTAGGTAATTGTTTAGTTTATGATTGCAGATAAACTCATGCCAGAGAACTTAAAGTCTTAGAATGGAAAAAGTAAAGAAATATCAACTTCCAAGTTGATAACATCTTCTGAGTCATAACCAGCCTGGCAGTATGATGGCCTAGATGCAGAGAAAACAGCTCCTTGGTGAATTGATAAGTAAAGGCAGAAAAGATTATATGTCATACCTCCATTGGGGAATAAGCATAACCCTGAGATTCTTACTACTGATGAGAACATTATCTGCATATGCCAAAAAATTTTAAGCAAATGAAAGCTACCAATTTAAAGTTACGGAATCTACCATTTTAAAGTTAATTGCTTGTCAAGCTATAACCACAAAAATAATGAATTGATGAGAAATACAATGAAGAGGCAATGTCCATCTCAAAATACTGCTTTTACAAAAGCAGAATAAAAGCGAAAAGAAATGAAAATGTTACACTACATTAATCCTGGAATAAAAGAAGCCGAAATAAATGAGAGATGAGTTGGGATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAGACAGGTATCTCTTCGTTATCAGAAGAGTTGCTTCATTTCATCTGGGAGCAGAAAACAGCAGGCAGCTGTTAACAGATAAGTTTAACTTGCATCTGCAGTATTGCATGTTAGGGATAAGTGCTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCTAGGGGATTTCAGGATTGAGAAATTTTTCCATCGAGCCTTTTTAAAATTGTAGGACTTGTTCCTGTGGGCTTCAGTGATGGGATAGTACACTTCACTCAGAGGCATTTGCATCTTTAAATAATTTCTTAAAAGCCTCTAAAGTGATCAGTGCCTTGATGCCAACTAAGGAAATTTGTTTAGCATTGAATCTCTGAAGGCTCTATGAAAGGAATAGCATGATGTGCTGTTAGAATCAGATGTTACTGCTAAAATTTACATGTTGTGATGTAAATTGTGTAGAAAACCATTAAATCATTCAAAATAATAAACTATTTTTATTAGAGAATGTATACTTTTAGAAAGCTGTCTCCTTATTTAAATAAAATAGTGTTTGTCTGTAGTTCAGTGTTGGGGCAATCTTGGGGGGGATTCTTCTCTAATCTTTCAGAAACTTTGTCTGCGAACACTCTTTAATGGACCAGATCAGGATTTGAGCGGAAGAACGAATGTAACTTTAAGGCAGGAAAGACAAATTTTATTCTTCATAAAGTGATGAGCATATAATAATTCCAGGCACATGGCAATAGAGGCCCTCTAAATAAGGAATAAATAACCTCTTAGACAGGTGGGAGATTATGATCAGAGTAAAAGGTAATTACACATTTTATTTCCAGAAAGTCAGGGGTCTATAAATTGACAGTGATTAGAGTAATACTTTTTCACATTTCCAAAGTTTGCATGTTAACTTTAAATGCTTACAATCTTAGAGTGGTAGGCAATGTTTTACACTATTGACCTTATATAGGGAAGGGAGGGGGTGCCTGTGGGGTTTTAAAGAATTTTCCTTTGCAGAGGCATTTCATCCTTCATGAAGCCATTCAGGATTTTGAATTGCATATGAGTGCTTGGCTCTTCCTTCTGTTCTAGTGAGTGTATGAGACCTTGCAGTGAGTTTATCAGCATACTCAAAATTTTTTTCCTGGAATTTGGAGGGATGGGAGGAGGGGGTGGGGCTTACTTGTTGTAGCTTTTTTTTTTTTTACAGACTTCACAGAGAATGCAGTTGTCTTGACTTCAGGTCTGTCTGTTCTGTTGGCAAGTAAATGCAGTACTGTTCTGATCCCGCTGCTATTAGAATGCATTGTGAAACGACTGGAGTATGATTAAAAGTTGTGTTCCCCAA
Disease | PMID | Dysfunction_type | Data source |
gallbladder cancer | 27420766 | expression | PMC6372806 |
gastric cancer | 27887846 | expression | PMC6372806 |
renal cell carcinoma | 25480417 | expression | PMC6372806 |
gastric cancer | 28942451 | regulated | PMC6372806 |
endometrial cancer | 27693631 | expression | PMC6372806 |
esophageal cancer | 25613496 | regulated | PMC6372806 |
osteosarcoma | 25431257 | regulated | PMC6372806 |
25773124 | PMC6372806 | ||
hepatocellular carcinoma | 28469957 | expression | PMC6372806 |
osteosarcoma | 28346809 | expression | PMC6372806 |
renal cell carcinoma | 25600645 | expression | PMC6372806 |
28535533 | expression | PMC6372806 | |
bladder cancer | 24449823 | expression | PMC6372806 |
gastric cancer | 27259812 | expression | PMC6372806 |
breast cancer | 28915533 | expression | PMC6372806 |
breast cancer | 26917489 | regulated | PMC6372806 |
26335021 | PMC6372806 | ||
gastric cancer | 25280565 | expression | PMC6372806 |
hepatocellular carcinoma | 21678027 | expression | PMC6372806 |
colorectal cancer | 25025966 | expression | PMC6372806 |
cholangiocarcinoma | 28059437 | expression | PMC6372806 |
multiple myeloma | 28295550 | expression | PMC6372806 |
tongue cancer | 28260102 | expression | PMC6372806 |
glioma | 26619802 | expression | PMC6372806 |
cervical cancer | 26242259 | expression | PMC6372806 |
colorectal cancer | 25446987 | expression | PMC6372806 |
mantle cell lymphoma | 27998273 | expression | PMC6372806 |
cervical cancer | 26798987 | expression | PMC6372806 |
colorectal cancer | 28069878 | expression | PMC6372806 |
thyroid cancer | 27470543 | expression | PMC6372806 |
bladder cancer | 28648755 | expression | PMC6372806 |
oral squamous cell carcinoma | 28926115 | expression | PMC6372806 |
hepatocellular carcinoma | 28543721 | expression | PMC6372806 |
prostate cancer | 23845456 | expression | PMC6372806 |
gastric cancer | 28276823 | expression | PMC6372806 |
bladder cancer | 23153939 | expression | PMC6372806 |
non-small-cell lung cancer | 25217850 | expression | PMC6372806 |
renal cell carcinoma | 27655020 | expression | PMC6372806 |
choriocarcinoma | 29096355 | expression | PMC6372806 |
oral squamous cell carcinoma | 26522444 | expression | PMC6372806 |
breast cancer | 27197265 | expression | PMC6372806 |
lung cancer | 23243023 | expression | PMC6372806 |
hypertension | 28056547 | expression | PMC6372806 |
hepatocellular carcinoma | 24468535 | expression | PMC6372806 |
pancreatic cancer | 25269958 | expression | PMC6372806 |
osteosarcoma | 26575981 | expression | PMC6372806 |
breast cancer | 26676637 | expression | PMC6372806 |
thyroid cancer | 28543663 | expression | PMC6372806 |
hepatocellular carcinoma | 28720061 | expression | PMC6372806 |
multiple myeloma | 25187517 | expression | PMC6372806 |
tongue cancer | 27586393 | expression | PMC6372806 |
gastric cancer | 28268166 | expression | PMC6372806 |
calcific aortic valve disease | 28522163 | expression | PMC6372806 |
esophageal cancer | 26493997 | expression | PMC6372806 |
pancreatic cancer | 28701723 | expression | PMC6372806 |
osteosarcoma | 28098894 | expression | PMC6372806 |
liver fibrosis | 26435214 | expression | PMC6372806 |
endometrial cancer | 25085246 | regulated | PMC6372806 |
nasopharyngeal carcinoma | 27584791 | regulated | PMC6372806 |
esophageal cancer | 27935117 | expression | PMC6372806 |
colorectal cancer | 29436635 | expression | PMC6372806 |
lung cancer | 28615056 | regulated | PMC6372806 |
esophageal cancer | 27470544 | expression | PMC6372806 |
glioma | 26938295 | expression | PMC6372806 |
osteoarthritis | 28590075 | expression | PMC6372806 |
hepatocellular carcinoma | 28722813 | expression | PMC6372806 |
29051139 | expression | PMC6372806 | |
gallbladder cancer | 29058818 | expression | PMC6372806 |
retinoblastoma | 29073720 | expression | PMC6372806 |
diabetes mellitus | 29110299 | expression | PMC6372806 |
22487937 | expression | PMC6372806 | |
multiple myeloma | 24583225 | expression | PMC6372806 |
Parkinson's disease | 27021022 | expression | PMC6372806 |
glioma | 29202181 | expression | PMC6372806 |
osteosarcoma | 29204769 | expression | PMC6372806 |
multiple myeloma | 29214735 | expression | PMC6372806 |
non-small-cell lung cancer | 29215698 | expression | PMC6372806 |
pancreatic cancer | 29215734 | expression | PMC6372806 |
colon cancer | 29226325 | expression | PMC6372806 |
29227193 | expression | PMC6372806 | |
29258822 | expression | PMC6372806 | |
29274336 | expression | PMC6372806 | |
osteosarcoma | 29290771 | expression | PMC6372806 |
esophageal squamous cell carcinoma | 25538231 | regulation | PMC5753334 |
gallbladder cancer | 24658096 | regulation | PMC5753334 |
colon cancer | 25546229 | regulation | PMC5753334 |
colorectal cancer | 25031737 | regulation | PMC5753334 |
bladder cancer | 24373479 | regulation | PMC5753334 |
breast cancer | 22492512 | regulation | PMC5753334 |
breast cancer | 22996375 | regulation | PMC5753334 |
breast cancer | 24499465 | regulation | PMC5753334 |
cancer | 23463798 | regulation | PMC5753334 |
cancer | 24757675 | regulation | PMC5753334 |
tumor | 24721780 | regulation | PMC5753334 |
prostate cancer | 23726266 | PMC5753334 | |
cervical cancer | 24932303 | PMC5753334 | |
pancreatic ductal adenocarcinoma | 24815433 | PMC5753334 | |
nasopharyngeal carcinoma | 23688988 | PMC5753334 | |
bladder cancer | 22722759 | PMC5753334 | |
gastric cancer | 24857172 | PMC5753334 | |
colorectal cancer | 24244343 | PMC5753334 | |
melanoma | 24892958 | PMC5753334 | |
breast cancer | 24525122 | PMC5753334 | |
neuroblastoma | 24742640 | PMC5753334 | |
prostate cancer | 22349460 | PMC5753334 | |
osteosarcoma | 17660802 | PMC5753334 | |
non-small cell lung cancer | 24313945 | PMC5753334 | |
multiple myeloma | 25369863 | PMC5753334 | |
breast cancer | 26918449 | PMC5753334 | |
breast cancer | 26926567 | PMC5753334 | |
gastric cancer | 26871474 | PMC5753334 | |
acute myocardial infarction | 25035150 | PMC5753334 | |
diabetes mellitus | 25356875 | PMC5753334 | |
glioblastoma | 25772239 | PMC5753334 | |
ovarian cancer | 24379988 | PMC5753334 | |
esophageal squamous cell carcinoma | 27015363 | PMC5753334 | |
colorectal cancer | 21503572 | PMC5753334 | |
lung cancer | 22491206 | PMC5753334 | |
hepatocelluar carcinoma | 22493738 | mutation | PMC5753334 |
paraspeckle disintegration | 19188602 | mutation | PMC5753334 |
renal cancer | 26461224 | interaction | PMC5753334 |
nasopharyngeal carcinoma | 26482776 | interaction | PMC5753334 |
cervical cancer | 26311052 | interaction | PMC5753334 |
non-small cell lung cancer | 26265046 | interaction | PMC5753334 |
lung cancer | 26415832 | interaction | PMC5753334 |
"hepatocellular carcinoma | |||
prostate cancer | 26516927 | interaction | PMC5753334 |
cervical cancer | 20213048 | Interaction | PMC5753334 |
non-small-cell lung cancer | 25036876 | interaction | PMC5753334 |
breast cancer | 26191181 | interaction | PMC5753334 |
pre-eclampsia | 26722461 | interaction | PMC5753334 |
breast cancer | 26275461 | interaction | PMC5753334 |
glioma | 26649728 | interaction | PMC5753334 |
lung adenocarcinoma | 20937273 | interaction | PMC5753334 |
cervical cancer | 26400521 | expression | PMC5753334 |
proliferative vitreoretinopathy | 26241674 | expression | PMC5753334 |
gastric cancer | 26096073 | expression | PMC5753334 |
non-small cell lung cancer | 26131129 | expression | PMC5753334 |
non-small cell lung cancer | 22088988 | expression | PMC5753334 |
triple-negative breast cancer | 25996380 | expression | PMC5753334 |
hepatocelluar carcinoma | 16878148 | expression | PMC5753334 |
pancreatic cancer | 25811929 | expression | PMC5753334 |
pituitary adenoma | 24469926 | expression | PMC5753334 |
pancreatic cancer | 25481511 | expression | PMC5753334 |
glioma | 25613066 | expression | PMC5753334 |
non-small cell lung cancer | 12970751 | expression | PMC5753334 |
esophageal squamous cell carcinoma | 26406400 | expression | PMC5753334 |
laryngeal squamous cell carcinoma | 25257554 | expression | PMC5753334 |
endometrial stromal sarcoma | 16441420 | expression | PMC5753334 |
bladder cancer | 24006935 | expression | PMC5753334 |
cancer | 20711585 | expression | PMC5753334 |
cancer | 20864030 | expression | PMC5753334 |
cancer | 23660942 | expression | PMC5753334 |
decreased myogenesis | 23485710 | expression | PMC5753334 |
diabetes mellitus | 24436191 | expression | PMC5753334 |
hepatocelluar carcinoma | 17006932 | expression | PMC5753334 |
hepatocelluar carcinoma | 24183851 | expression | PMC5753334 |
lung adenocarcinoma | 19690017 | expression | PMC5753334 |
lung cancer | 24667321 | expression | PMC5753334 |
non-small cell lung cancer | 21550244 | expression | PMC5753334 |
non-small cell lung cancer | 21903344 | expression | PMC5753334 |
non-small cell lung cancer | 22817756 | expression | PMC5753334 |
osteosarcoma | 20951849 | expression | PMC5753334 |
small cell lung cancer | 22928560 | expression | PMC5753334 |
papillary thyroid carcinoma | 25997963 | expression | PMC5753334 |
neuroblastoma | 20149803 | expression | PMC5753334 |
lung cancer | 26137228 | expression | PMC5753334 |
laryngeal squamous cell carcinoma | 24817925 | expression | PMC5753334 |
Level of interaction | Type | Target | PMID | Data source |
DNA-TF | regulation | CREB | 20149803 | PMC5753334 |
RNA-Protein | binding | SR | 20797886 | PMC5753334 |
RNA-Protein | binding | SR proteins | 20797886 | PMC5753334 |
RNA-Protein | regulation | SR protein family | 20864030 | PMC5753334 |
RNA-Protein | regulation | SRSF1 | 20864030 | PMC5753334 |
RNA-Protein | binding | p54nrb | 21444682 | PMC5753334 |
RNA-Protein | binding | PSF | 21444682 | PMC5753334 |
DNA-Protein | regulation | Pc2 | 22078878 | PMC5753334 |
DNA-Protein | regulation | Pc2 | 22078878 | PMC5753334 |
RNA-Protein | regulation | RNPS1 | 22355166 | PMC5753334 |
RNA-Protein | regulation | SRm160 | 22355166 | PMC5753334 |
RNA-Protein | regulation | IBP160 | 22355166 | PMC5753334 |
RNA-Protein | regulation | pre-mRNA splicing factors | 23698766 | PMC5753334 |
RNA-DNA | regulation | Bcl-2 | 25036876 | PMC5753334 |
RNA-DNA | binding | Sp1 and LTBP3 promoter | 25187517 | PMC5753334 |
regulation | Cisplatin and paclitaxel | 25257554 | PMC5753334 | |
RNA-RNA | regulation | SiRNA | 25280565 | PMC5753334 |
RNA-Protein | regulation | PI3K/AKT signaling pathway | 25431257 | PMC5753334 |
RNA-RNA | regulation | miR-101 and miR-217 | 25538231 | PMC5753334 |
RNA-Protein | regulation | CCL5 | 25546229 | PMC5753334 |
RNA-Protein | regulation | ATM-CHK2 pathway | 25613496 | PMC5753334 |
RNA-Protein | regulation | RANKL | 25817340 | PMC5753334 |
regulation | PI3K-AKT pathway | 26191181 | PMC5753334 | |
RNA-RNA | regulation | miRNA-124 | 26242259 | PMC5753334 |
RNA-Protein | binding | TDP-43 | 26265046 | PMC5753334 |
RNA-RNA | regulation | hsa-miR-1 | 26275461 | PMC5753334 |
RNA-RNA | regulation | miR-145 | 26311052 | PMC5753334 |
DNA-Protein | regulation | Sp1/3 | 26352013 | PMC5753334 |
RNA-Protein | regulation | EZH2 (enhancer of zeste homolog 2) and H3K27me3 | 26415832 | PMC5753334 |
DNA-RNA | regulation | miR-217 | 26415832 | PMC5753334 |
RNA-RNA | binding | miR-200s | 26461224 | PMC5753334 |
RNA-RNA | regulation | miR-1 | 26482776 | PMC5753334 |
RNA-Protein | binding | EZH2 | 26516927 | PMC5753334 |
RNA-Protein | regulation | N-cadherin, Vimentin, E-cadherin | 26522444 | PMC5753334 |
RNA-Protein | regulation | ZO-1, occludin and claudin-5 | 26619802 | PMC5753334 |
RNA-RNA | regulation | miR-140 | 26619802 | PMC5753334 |
regulation | ERK/MAPK signaling | 26649728 | PMC5753334 | |
RNA-Protein | regulation | Sox2 and Nestin | 26649728 | PMC5753334 |
RNA-RNA | regulation | Hsa-miR-1 | 26676637 | PMC5753334 |
RNA-Protein | regulation | pro-apoptotic proteins including cleaved caspase-3, cleaved caspase-9 and cleaved poly (ADP-ribose) | 26722461 | PMC5753334 |
RNA-DNA | regulation | PCDH10 | 26871474 | PMC5753334 |
RNA-Protein | binding | EZH2 | 26871474 | PMC5753334 |
RNA-RNA | binding | miR-124 | 26918449 | PMC5753334 |
RNA-DNA | regulation | cyclin-dependent kinase 4 (CDK4) | 26918449 | PMC5753334 |
RNA-DNA | regulation | cdc42 | 26926567 | PMC5753334 |
RNA-RNA | binding | miR-1 | 26926567 | PMC5753334 |
Conserved in: | 10 species |
Not found in: | 1 species |
Most distant counterpart in: | Marmoset |
Conserved species: | Chimp, Bonobo, Gorilla, Orangutan, Rhesus, Crab-eating macaque, Atys, Baboon, Green monkey, Marmoset |
Not found in: | Lemur |
Human non-coding transcript
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ENSEMBL BrowserCheck the reference ENSEMBL
transcript ID
Open the region of interest in the UCSC Genome Browser