Human non-coding transcript
| Relation to reference | Potentially novel isoform (fragment) |
| Reference ENSEMBL ID | ENST00000612781 |
| Reference alias | MALAT1 |
| Biotype of reference transcript | lincRNA |
| Reference Gene ID | ENSG00000251562 |
| Transcript ID | MSTRG.22375.19 |
| Chromosome | 11 |
| Start | 65499042 |
| Stop | 65506465 |
| Strand | + |
| Exons | 6 |
| Length | 5238 nt |
| Protein coding potential | Low |
| Sample ID | Sample type | Expression (TPM) |
|---|---|---|
| ENCSR000CQA | K562 | 295.766569 |
| ENCSR000CTK | IMR-90 | 170.259988 |
| ENCSR000CTX | pericyte cell | 91.3851 |
| ENCSR369RVN | cardiac ventricle fibroblast | 75.79005500000001 |
| ENCSR510MIA | esophagus squamous epithelium | 57.293776 |
| ENCSR000CPD | HepG2 | 56.825076 |
| ENCSR357XTU | natural killer cell | 51.238521 |
| ENCSR000CPI | keratinocyte | 44.264272 |
| ENCSR995JXE | neural cell | 42.603 |
| ENCSR667JTA | MCF-7 | 39.583385 |
| ENCSR000AAS | smooth muscle cell of trachea | 39.240908000000005 |
| ENCSR991HIR | lower leg skin | 37.911037 |
| ENCSR000AFA | metanephros | 37.512134 |
| ENCSR000AAR | tracheal epithelial cell | 37.204269000000004 |
| ENCSR000AAN | smooth muscle cell of the pulmonary artery | 32.327155 |
| ENCSR000AFK | thyroid gland | 32.151243 |
| ENCSR000CUO | mesenchymal stem cell of Wharton's jelly | 32.080526 |
| ENCSR000CUQ | melanocyte of skin | 26.411878 |
| ENCSR000AFI | stomach | 26.406449 |
| ENCSR000COT | H1-hESC | 25.666999 |
| ENCSR000AHH | heart | 24.688579999999998 |
| ENCSR480SLD | suprapubic skin | 22.210895 |
| ENCSR862RGX | suprapubic skin | 15.907128 |
| ENCSR648OSR | tibial nerve | 15.499303 |
| ENCSR837ZLY | thoracic aorta | 15.148874 |
| ENCSR450ENK | suprapubic skin | 14.97003 |
| ENCSR000CUA | hematopoietic multipotent progenitor cell | 14.432585999999999 |
| ENCSR671WMH | subcutaneous adipose tissue | 13.831269 |
| ENCSR052FJA | smooth muscle cell | 13.580782999999998 |
| ENCSR504NIU | subcutaneous adipose tissue | 12.725495 |
| ENCSR094VRQ | breast epithelium | 12.253827000000001 |
| ENCSR857WJK | sigmoid colon | 11.978397 |
| ENCSR000AFB | liver | 11.533683 |
| ENCSR391VGU | heart left ventricle | 10.637616 |
| ENCSR226KML | right lobe of liver | 10.472211999999999 |
| ENCSR000CUD | mesenchymal stem cell of the bone marrow | 10.306421 |
| ENCSR485WBR | gastroesophageal sphincter | 10.236393 |
| ENCSR796HLX | tibial nerve | 10.167983999999999 |
| ENCSR719PXC | ascending aorta | 9.936409 |
| ENCSR000CQD | foreskin fibroblast | 9.339863000000001 |
| ENCSR296PMS | stomach | 9.10642 |
| ENCSR000CUJ | fibroblast of the aortic adventitia | 8.949885 |
| ENCSR198TKA | mesangial cell | 8.926674 |
| ENCSR000AAA | aortic smooth muscle cell | 8.682993 |
| ENCSR071ZLM | uterus | 8.004128999999999 |
| ENCSR000COS | GM12878 | 7.912501 |
| ENCSR000CTZ | mesenchymal stem cell of adipose | 7.608198 |
| ENCSR460YCS | lower leg skin | 7.287881 |
| ENCSR708VVE | subcutaneous adipose tissue | 6.906147 |
| ENCSR968WKR | bipolar neuron | 6.157831 |
| ENCSR000CUI | skeletal muscle satellite cell | 6.127209 |
| ENCSR000CPV | skeletal muscle myoblast | 6.027183 |
| ENCSR000CUR | melanocyte of skin | 5.632236 |
| ENCSR000AFN | uterus | 5.422798 |
| ENCSR000AEZ | heart | 5.336592 |
| ENCSR527SSD | foreskin keratinocyte | 5.3246269999999996 |
| ENCSR080HPT | omental fat pad | 5.287831 |
| ENCSR504QMK | right lobe of liver | 5.282057 |
| ENCSR000AAI | dermis blood vessel endothelial cell | 5.277089 |
| ENCSR528ZKN | gastroesophageal sphincter | 5.111527 |
| ENCSR800WIY | transverse colon | 4.807997 |
| ENCSR000AFG | skin of body | 4.511616 |
| ENCSR000AEU | liver | 4.317455000000001 |
| ENCSR000AEW | cerebellum | 4.278593 |
| ENCSR959LTT | foreskin keratinocyte | 4.066773 |
| ENCSR000CVT | GM12878 | 3.8763 |
| ENCSR620NSN | bronchus fibroblast of lung | 3.8339980000000002 |
| ENCSR313COD | upper lobe of left lung | 3.8317419999999998 |
| ENCSR645TCG | omental fat pad | 3.8075129999999997 |
| ENCSR449GLL | B cell | 3.763983 |
| ENCSR330UMQ | spleen | 3.698382 |
| ENCSR729CAZ | omental fat pad | 3.691932 |
| ENCSR586SYA | body of pancreas | 3.632965 |
| ENCSR630VJN | transverse colon | 3.6067980000000004 |
| ENCSR106SZN | spleen | 3.547686 |
| ENCSR334HNJ | K562 | 3.5019699999999996 |
| ENCSR000CQJ | HeLa-S3 | 3.4997949999999998 |
| ENCSR000CQH | endothelial cell of umbilical vein | 3.4823239999999998 |
| ENCSR000CUF | osteoblast | 3.456352 |
| ENCSR146LBD | vagina | 3.351432 |
| ENCSR858QEL | tibial nerve | 3.351086 |
| ENCSR000AAU | smooth muscle cell of the umbilical artery | 3.336841 |
| ENCSR474TRG | esophagus squamous epithelium | 3.2838190000000003 |
| ENCSR905LVO | CD14-positive monocyte | 3.059518 |
| ENCSR110BDY | cardiac atrium fibroblast | 2.9748 |
| ENCSR544SAU | Peyer's patch | 2.973816 |
| ENCSR555BCP | adrenal gland | 2.951725 |
| ENCSR900SGE | spleen | 2.930543 |
| ENCSR000CUE | articular chondrocyte of knee joint | 2.895457 |
| ENCSR239BCO | K562 | 2.8434150000000002 |
| ENCSR272UNO | tibial nerve | 2.8123549999999997 |
| ENCSR812AKX | sigmoid colon | 2.762235 |
| ENCSR000CUH | fibroblast of dermis | 2.686256 |
| ENCSR754WLW | adrenal gland | 2.622671 |
| ENCSR000AFD | occipital lobe | 2.604753 |
| ENCSR000CUB | hair follicle dermal papilla cell | 2.5234810000000003 |
| ENCSR000AFH | spinal cord | 2.490048 |
| ENCSR136WGP | SK-N-DZ | 2.419243 |
| ENCSR628JYB | K562 | 2.282255 |
| ENCSR094GVZ | sigmoid colon | 2.249793 |
| ENCSR314LXG | Karpas-422 | 2.217907 |
| ENCSR740YMS | gastroesophageal sphincter | 2.198403 |
| ENCSR182CBU | esophagus muscularis mucosa | 2.072136 |
| ENCSR434TEU | breast epithelium | 2.018989 |
| ENCSR000CUN | mammary epithelial cell | 1.991585 |
| ENCSR620LQN | esophagus muscularis mucosa | 1.869431 |
| ENCSR158KFO | omental fat pad | 1.791423 |
| ENCSR000CUL | fibroblast of villous mesenchyme | 1.789816 |
| ENCSR207QGW | K562 | 1.788 |
| ENCSR000AFE | parietal lobe | 1.774186 |
| ENCSR257NIR | Peyer's patch | 1.723756 |
| ENCSR913CAE | K562 | 1.722663 |
| ENCSR908ZAS | hepatocyte | 1.714818 |
| ENCSR332DBS | LHCN-M2 | 1.7000979999999999 |
| ENCSR108MAU | suprapubic skin | 1.684708 |
| ENCSR897KTO | epithelial cell of alveolus of lung | 1.59149 |
| ENCSR527IVX | K562 | 1.580083 |
| ENCSR000CTP | IMR-90 | 1.557754 |
| ENCSR000AEV | urinary bladder | 1.488389 |
| ENCSR354QPN | esophagus squamous epithelium | 1.459637 |
| ENCSR034RPU | foreskin keratinocyte | 1.4561309999999998 |
| ENCSR150QJY | subcutaneous adipose tissue | 1.437457 |
| ENCSR438YPF | breast epithelium | 1.32828 |
| ENCSR253DCB | K562 | 1.3073350000000001 |
| ENCSR000CQI | HeLa-S3 | 1.264416 |
| ENCSR750ETS | esophagus muscularis mucosa | 1.2540850000000001 |
| ENCSR000AFJ | temporal lobe | 1.233686 |
| ENCSR000CUK | thoracic aorta endothelial cell | 1.205608 |
| ENCSR560AYQ | K562 | 1.1942840000000001 |
| ENCSR841ADZ | ovary | 1.1651690000000001 |
| ENCSR444WHQ | skeletal muscle myoblast | 1.159457 |
| ENCSR351OTL | esophagus squamous epithelium | 1.055806 |
| ENCSR880EGO | SJSA1 | 1.020206 |
| ENCSR406SAW | upper lobe of left lung | 1.00862 |
| ENCSR143UET | K562 | 0.993302 |
| ENCSR495YSS | K562 | 0.975144 |
| ENCSR139BIJ | K562 | 0.954425 |
| ENCSR379YAE | cardiac muscle cell | 0.900624 |
| ENCSR048BWH | K562 | 0.899136 |
| ENCSR678TMV | gastrocnemius medialis | 0.88282 |
| ENCSR436QDU | heart left ventricle | 0.871611 |
| ENCSR952RRH | K562 | 0.8689530000000001 |
| ENCSR292TAP | neural cell | 0.845928 |
| ENCSR000AAM | pulmonary artery endothelial cell | 0.8269 |
| ENCSR000AAQ | renal cortical epithelial cell | 0.816521 |
| ENCSR898NWE | K562 | 0.791088 |
| ENCSR706SXN | HepG2 | 0.78447 |
| ENCSR680USE | hair follicular keratinocyte | 0.773378 |
| ENCSR000AAL | nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa | 0.747078 |
| ENCSR000AEX | diencephalon | 0.737004 |
| ENCSR674KEK | HepG2 | 0.724803 |
| ENCSR373BDG | kidney epithelial cell | 0.717938 |
| ENCSR113HRG | K562 | 0.715514 |
| ENCSR000CQO | keratinocyte | 0.709639 |
| ENCSR561CBC | K562 | 0.6977 |
| ENCSR398HXV | K562 | 0.675201 |
| ENCSR942UNX | K562 | 0.6750430000000001 |
| ENCSR891AXF | K562 | 0.6726260000000001 |
| ENCSR828TEI | myotube | 0.669882 |
| ENCSR675KPR | K562 | 0.668258 |
| ENCSR354XQY | HepG2 | 0.657934 |
| ENCSR254JJM | Daoy | 0.6543680000000001 |
| ENCSR001HHK | OCI-LY7 | 0.652317 |
| ENCSR351CNN | K562 | 0.642465 |
| ENCSR571RXE | right atrium auricular region | 0.6138600000000001 |
| ENCSR000AAJ | dermis lymphatic vessel endothelial cell | 0.612021 |
| ENCSR509LIV | HepG2 | 0.6058140000000001 |
| ENCSR495HDM | prostate gland | 0.604179 |
| ENCSR629EWX | K562 | 0.5968140000000001 |
| ENCSR000CUM | subcutaneous preadipocyte | 0.576363 |
| ENCSR000CUG | vein endothelial cell | 0.543658 |
| ENCSR827IXS | sigmoid colon | 0.5411819999999999 |
| ENCSR164OCT | NCI-H460 | 0.530365 |
| ENCSR701TST | prostate gland | 0.487918 |
| ENCSR165BCF | K562 | 0.47554799999999997 |
| ENCSR788YGG | K562 | 0.47516 |
| ENCSR000AAV | uterine smooth muscle cell | 0.47458500000000003 |
| ENCSR244ISQ | neural progenitor cell | 0.468742 |
| ENCSR528ASX | K562 | 0.46531000000000006 |
| ENCSR944FLL | CD8-positive alpha-beta T cell | 0.45117399999999996 |
| ENCSR769GES | HepG2 | 0.449988 |
| ENCSR468ION | HepG2 | 0.441863 |
| ENCSR181RLB | K562 | 0.41682700000000006 |
| ENCSR000AEN | K562 | 0.39729699999999996 |
| ENCSR947OIM | K562 | 0.394094 |
| ENCSR797BPP | fibroblast of arm | 0.393138 |
| ENCSR385KOY | HepG2 | 0.392505 |
| ENCSR905HID | HepG2 | 0.39216999999999996 |
| ENCSR938LSP | GM23338 | 0.38971 |
| ENCSR624FBY | HepG2 | 0.380706 |
| ENCSR485ZTC | HepG2 | 0.373364 |
| ENCSR732ICL | K562 | 0.370971 |
| ENCSR810JYX | HepG2 | 0.367969 |
| ENCSR577XBW | K562 | 0.36631199999999997 |
| ENCSR000CPZ | K562 | 0.355118 |
| ENCSR504VXC | A375 | 0.339448 |
| ENCSR496ETJ | HepG2 | 0.33619899999999997 |
| ENCSR492BKM | K562 | 0.33527399999999996 |
| ENCSR113HQM | uterus | 0.335147 |
| ENCSR000CPH | K562 | 0.31271 |
| ENCSR853PBF | HepG2 | 0.304077 |
| ENCSR648QFY | K562 | 0.303978 |
| ENCSR667RIA | HepG2 | 0.300668 |
| ENCSR669KQU | SK-MEL-5 | 0.298854 |
| ENCSR338CON | K562 | 0.293286 |
| ENCSR000AEC | GM12878 | 0.292659 |
| ENCSR850FEH | HepG2 | 0.288709 |
| ENCSR919MZM | endometrial microvascular endothelial cells | 0.28686100000000003 |
| ENCSR671IYC | body of pancreas | 0.284123 |
| ENCSR258VGD | K562 | 0.2833 |
| ENCSR839ZDH | upper lobe of left lung | 0.279624 |
| ENCSR410MIQ | K562 | 0.276325 |
| ENCSR609NZM | gastrocnemius medialis | 0.271364 |
| ENCSR312HJY | K562 | 0.26345 |
| ENCSR653DFZ | G401 | 0.262936 |
| ENCSR695XOD | HepG2 | 0.25935 |
| ENCSR998RZI | HepG2 | 0.253496 |
| ENCSR942MBU | HepG2 | 0.25301799999999997 |
| ENCSR251ABP | K562 | 0.23928000000000002 |
| ENCSR717SJA | K562 | 0.23718699999999998 |
| ENCSR000COY | skeletal muscle myoblast | 0.230829 |
| ENCSR398GHW | K562 | 0.225813 |
| ENCSR674KDQ | HepG2 | 0.209788 |
| ENCSR936TED | K562 | 0.20892199999999997 |
| ENCSR355OQC | HepG2 | 0.19652999999999998 |
| ENCSR219DXZ | K562 | 0.19585 |
| ENCSR822SUG | airway epithelial cell | 0.195824 |
| ENCSR533HXS | HepG2 | 0.17991 |
| ENCSR894WMQ | myocyte | 0.179721 |
| ENCSR281KCL | HepG2 | 0.178264 |
| ENCSR778AJO | HepG2 | 0.177324 |
| ENCSR639LKS | HepG2 | 0.17322200000000001 |
| ENCSR000CPJ | keratinocyte | 0.172822 |
| ENCSR000CQR | H1-hESC | 0.16464600000000001 |
| ENCSR000AFF | skeletal muscle tissue | 0.163501 |
| ENCSR331DUD | K562 | 0.151295 |
| ENCSR535VTR | HT1080 | 0.150299 |
| ENCSR459EMR | HepG2 | 0.14797000000000002 |
| ENCSR385TMY | HepG2 | 0.144654 |
| ENCSR599PXD | HepG2 | 0.144629 |
| ENCSR958KSY | HepG2 | 0.142717 |
| ENCSR694LKY | K562 | 0.13936600000000002 |
| ENCSR042GYH | ovary | 0.13761199999999998 |
| ENCSR661HEL | K562 | 0.132323 |
| ENCSR000CTS | SK-N-SH | 0.131613 |
| ENCSR118TVR | epithelial cell of proximal tubule | 0.129197 |
| ENCSR569JKX | SK-N-DZ | 0.129173 |
| ENCSR057GCF | HepG2 | 0.125361 |
| ENCSR945UYL | HepG2 | 0.124048 |
| ENCSR092WKG | K562 | 0.12137 |
| ENCSR618IQH | K562 | 0.12009600000000001 |
| ENCSR295XKC | HepG2 | 0.116967 |
| ENCSR000COR | GM12878 | 0.11571 |
| ENCSR812EIA | K562 | 0.107397 |
| ENCSR000CPB | endothelial cell of umbilical vein | 0.10465799999999999 |
| ENCSR464ADT | K562 | 0.10290999999999999 |
| ENCSR000AEY | frontal cortex | 0.095124 |
| ENCSR580GSX | A172 | 0.090373 |
| ENCSR004RGI | K562 | 0.087538 |
| ENCSR000CPT | MCF-7 | 0.08680700000000001 |
| ENCSR000CQF | GM12878 | 0.081977 |
| ENCSR457ENP | right atrium auricular region | 0.078864 |
| ENCSR527QNC | HepG2 | 0.071323 |
| ENCSR237IWZ | HepG2 | 0.070713 |
| ENCSR201WFU | K562 | 0.06652000000000001 |
| ENCSR603TCV | HepG2 | 0.066118 |
| ENCSR000KYM | K562 | 0.065481 |
| ENCSR898OPN | K562 | 0.059954999999999994 |
| ENCSR194HVU | spleen | 0.05959 |
| ENCSR927SLP | HepG2 | 0.056972 |
| ENCSR971GPJ | HT-29 | 0.05230800000000001 |
| ENCSR568YRP | SJCRH30 | 0.048393 |
| ENCSR321PGV | lower leg skin | 0.044584 |
| ENCSR861QKF | CD8-positive alpha-beta T cell | 0.043286 |
| ENCSR906RHU | K562 | 0.039914 |
| ENCSR696SMK | M059J | 0.03714 |
| ENCSR000CTO | MCF-7 | 0.034141000000000005 |
| ENCSR000CPO | GM12878 | 0.033808 |
| ENCSR752UNJ | stomach | 0.03322 |
| ENCSR344XID | K562 | 0.025973000000000003 |
| ENCSR000CPN | SK-N-SH | 0.025425 |
| ENCSR570CWH | HepG2 | 0.024242 |
| ENCSR878EUT | glomerular endothelial cell | 0.023581 |
| ENCSR081XRA | K562 | 0.021005000000000003 |
| ENCSR545AIK | K562 | 0.01816 |
| ENCSR118KUN | HepG2 | 0.015271000000000002 |
| ENCSR000AEF | GM12878 | 0.013319 |
| ENCSR129RWD | K562 | 0.012753 |
| ENCSR624OUI | K562 | 0.011623 |
| ENCSR425RGZ | upper lobe of left lung | 0.010733 |
| ENCSR490SQH | H7-hESC | 0.003414 |
| ENCSR545MEZ | CD4-positive helper T cell | 0.003406 |
| ENCSR345VVZ | K562 | 0.001425 |
| ENCSR000CPR | HeLa-S3 | 0.0014199999999999998 |
| ENCSR958NDU | K562 | 0.001134 |
| ENCSR000CQG | endothelial cell of umbilical vein | 0.001005 |
| ENCSR978CSQ | K562 | 0.000983 |
| ENCSR361LBE | K562 | 0.000909 |
| ENCSR448JAM | K562 | 0.000664 |
| ENCSR608IAI | K562 | 0.000615 |
| ENCSR511SYK | HepG2 | 0.000283 |
| ENCSR302JQA | K562 | 0.000265 |
| ENCSR118EFE | K562 | 0.000221 |
| ENCSR584LDM | K562 | 0.000217 |
| ENCSR438MDN | K562 | 0.000161 |
| ENCSR945XKW | HepG2 | 0.00011 |
| ENCSR310VND | K562 | 0.00010400000000000001 |
| ENCSR210DML | HepG2 | 0.000103 |
| ENCSR237YZT | HepG2 | 0.000101 |
| ENCSR395FYF | K562 | 7.6e-05 |
| ENCSR056QEW | K562 | 3.9e-05 |
| ENCSR648BSC | HepG2 | 2.8999999999999997e-05 |
| ENCSR964YTW | HepG2 | 2.7000000000000002e-05 |
| ENCSR952QDQ | K562 | 2.5e-05 |
| ENCSR744YVR | HepG2 | 2.5e-05 |
| ENCSR098BUF | esophagus muscularis mucosa | 9e-06 |
| ENCSR815JDY | HepG2 | 8e-06 |
| ENCSR000CTT | SK-N-SH | 7.000000000000001e-06 |
| ENCSR047EEG | K562 | 7.000000000000001e-06 |
| ENCSR599UDS | K562 | 3e-06 |
| ENCSR067GHD | HepG2 | 2e-06 |
| ENCSR232XRZ | K562 | 2e-06 |
| ENCSR925SYZ | HepG2 | 2e-06 |
| ENCSR134JRE | K562 | 1e-06 |
| ENCSR334BTA | K562 | 1e-06 |
| ENCSR084SCN | K562 | 1e-06 |
| ENCSR094KBY | HepG2 | 1e-06 |
>MSTRG.22375.19
GGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAGATAGAGATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATATGAAGACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGGTTGAGATGAAGCTTCTTCATGGAGTAAAAAATGTATTTAAAAGAAAATTGAGAGAAAGGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTTTCTCTTTTTCAGGCTTATACTCATGAATCTTGTCTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATAGTAGATGGCAAGTTTGTGGGTTTTTTTTTTTTACACGAATTTGAGGAAAACCAAATGAATTTGATAGCCAAATTGAGACAATTTCAGCAAATCTGTAAGCAGTTTGTATGTTTAGTTGGGGTAATGAAGTATTTCAGTTTTGTGAATAGATGACCTGTTTTTACTTCCTCACCCTGAATTCGTTTTGTAAATGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGTTTTCAGTATTTTTTTTTGTGGGGGTGGGGGCAAAATATGTTTTCAGTTCTTTTTCCCTTAGGTCTGTCTAGAATCCTAAAGGCAAATGACTCAAGGTGTAACAGAAAACAAGAAAATCCAATATCAGGATAATCAGACCACCACAGGTTTACAGTTTATAGAAACTAGAGCAGTTCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTAGTTACTCTTTTTTCCCCCCACCCCCTTAATCAGACTTTAAAAGTGCTTAACCCCTTAAACTTGTTATTTTTTACTTGAAGCATTTTGGGATGGTCTTAACAGGGAAGAGAGAGGGTGGGGGAGAAAATGTTTTTTTCTAAGATTTTCCACAGATGCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAGTGTACCGCTGTGCTGTTGGCACGAACACCTTCAGGGACTGGAGCTGCTTTTATCCTTGGAAGAGTATTCCCAGTTGAAGCTGAAAAGTACAGCACAGTGCAGCTTTGGTTCATATTCAGTCATCTCAGGAGAACTTCAGAAGAGCTTGAGTAGGCCAAATGTTGAAGTTAAGTTTTCCAATAATGTGACTTCTTAAAAGTTTTATTAAAGGGGAGGGGCAAATATTGGCAATTAGTTGGCAGTGGCCTGTTACGGTTGGGATTGGTGGGGTGGGTTTAGGTAATTGTTTAGTTTATGATTGCAGATAAACTCATGCCAGAGAACTTAAAGTCTTAGAATGGAAAAAGTAAAGAAATATCAACTTCCAAGTTGGCAAGTAACTCCCAATGATTTAGTTTTTTTCCCCCCAGTTTGAATTGGGAAGCTGGGGGAAGTTAAATATGAGCCACTGGGTGTACCAGTGCATTAATTTGGGCAAGGAAAGTGTCATAATTTGATACTGTATCTGTTTTCCTTCAAAGTATAGAGCTTTTGGGGAAGGAAAGTATTGAACTGGGGGTTGGTCTGGCCTACTGGGCTGACATTAACTACAATTATGGGAAATGCAAAAGTTGTTTGGATATGGTAGTGTGTGGTTCTCTTTTGGAATTTTTTTCAGGTGATTTAATAATAATTTAAAACTACTATAGAAACTGCAGAGCAAAGGAAGTGGCTTAATGATCCTGAAGGGATTTCTTCTGATGGTAGCTTTTGTATTATCAAACTTTTTTCAGATAACATCTTCTGAGTCATAACCAGCCTGGCAGTATGATGGCCTAGATGCAGAGAAAACAGCTCCTTGGTGAATTGATAAGTAAAGGCAGAAAAGATTATATGTCATACCTCCATTGGGGAATAAGCATAACCCTGAGATTCTTACTACTGATGAGAACATTATCTGCATATGCCAAAAAATTTTAAGCAAATGAAAGCTACCAATTTAAAGTTACGGAATCTACCATTTTAAAGTTAATTGCTTGTCAAGCTATAACCACAAAAATAATGAATTGATGAGAAATACAATGAAGAGGCAATGTCCATCTCAAAATACTGCTTTTACAAAAGCAGAATAAAAGCGAAAAGAAATGAAAATGTTACACTACATTAATCCTGGAATAAAAGAAGCCGAAATAAATGAGAGATGAGTTGGGATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAGACAGGTATCTCTTCGTTATCAGAAGAGTTGCTTCATTTCATCTGGGAGCAGAAAACAGCAGGCAGCTGTTAACAGATAAGTTTAACTTGCATCTGCAGTATTGCATGTTAGGGATAAGTGCTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCTAGGGGATTTCAGGATTGAGAAATTTTTCCATCGAGCCTTTTTAAAATTGTAGGACTTGTTCCTGTGGGCTTCAGTGATGGGATAGTACACTTCACTCAGAGGCATTTGCATCTTTAAATAATTTCTTAAAAGCCTCTAAAGTGATCAGTGCCTTGATGCCAACTAAGGAAATTTGTTTAGCATTGAATCTCTGAAGGCTCTATGAAAGGAATAGCATGATGTGCTGTTAGAATCAGATGTTACTGCTAAAATTTACATGTTGTGATGTAAATTGTGTAGAAAACCATTAAATCATTCAAAATAATAAACTATTTTTATTAGAGAATGTATACTTTTAGAAAGCTGTCTCCTTATTTAAATAAAATAGTGTTTGTCTGTAGTTCAGTGTTGGGGCAATCTTGGGGGGGATTCTTCTCTAATCTTTCAGAAACTTTGTCTGCGAACACTCTTTAATGGACCAGATCAGGATTTGAGCGGAAGAACGAATGTAACTTTAAGAGGCATTTCATCCTTCATGAAGCCATTCAGGATTTTGAATTGCATATGAGTGCTTGGCTCTTCCTTCTGTTCTAACTTCACAGAGAATGCAGTTGTCTTGACTTCAGGTCTGTCTGTTCTGTTGGCAAGTAAATGCAGTACTGTTCTGATCCCGCTGCTATTAGAATGCATTGTGAAACGACTGGAGTATGATTAAAAGTTGTGTTCCCCAATGCTTGGAGTAGTGATTGTTGAAGGAAAAAATCCAGCTGAGTGATAAAGGCTGAGTGTTGAGGAAATTTCTGCAGTTTTAAGCAGTCGTATTTGTGATTGAAGCTGAGTACATTTTGCTGGTGTATTTTTAGGTAAAATGCTTTTTGTTCATTTCTGGTGGTGGGAGGGGACTGAAGCCTTTAGTCTTTTCCAGATGCAACCTTAAAATCAGTGACAAGAAACATTCCAAACAAGCAACAGTCTTCAAGAAATTAAACTGGCAAGTGGAAATGTTTAAACAGTTCAGTGATCTTTAGTGCATTGTTTATGTGTGGGTTTCTCTCTCCCCTCCCTTGGTCTTAATTCTTACATGCAGGAACACTCAGCAGACACACGTATGCGAAGGGCCAGAGAAGCCAGACCCAGTAAGAAAAAATAGCCTATTTACTTTAAATAAACCAAACATTCCATTTTAAATGTGGGGATTGGGAACCACTAGTTCTTTCAGATGGTATTCTTCAGACTATAGAAGGAGCTTCCAGTTGAATTCACCAGTGGACAAAATGAGGAAAACAGGTGAACAAGCTTTTTCTGTATTTACATACAAAGTCAGATCAGTTATGGGACAATAGTATTGAATAGATTTCAGCTTTATGCTGGAGTAACTGGCATGTGAGCAAACTGTGTTGGCGTGGGGGTGGAGGGGTGAGGTGGGCGCTAAGCCTTTTTTTAAGATTTTTCAGGTACCCCTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCATGGAGCCTTCCTGTGGCAGGAGAGACAACAAAGCGCTATTATCCTAAGGTCAAGAGAAGTGTCAGCCTCACCTGATTTTTATTAGTAATGAGGACTTGCCTCAACTCCCTCTTTCTGGAGTGAAGCATCCGAAGGAATGCTTGAAGTACCCCTGGGCTTCTCTTAACATTTAAGCAAGCTGTTTTTATAGCAGCTCTTAATAATAAAGCCCAAATCTCAAGCGGTGCTTGAAGGGGAGGGAAAGGGGGAAAGCGGGCAACCACTTTTCCCTAGCTTTTCCAGAAGCCTGTTAAAAGCAAGGTCTCCCCACAAGCAACTTCTCTGCCACATCGCCACCCCGTGCCTTTTGATCTAGCACAGACCCTTCACCCCTCACCTCGATGCAGCCAGTAGCTTGGATCCTTGTGGGCATGATCCATAATCGGTTTCAAGGTAACGATGGTGTCGAGGTCTTTGGTGGGTTGAACTATGTTAGAAAAGGCCATTAATTTGCCTGCAAATTGTTAACAGAAGGGTATTAAAACCACAGCTAAGTAGCTCTATTATAATACTTATCCAGTGACTAAAACCAACTTAAACCAGTAAGTGGAGAAATAACATGTTCAAGAACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTGAGAGGGCTTTTGGGTGGGAATGCAAAAATTCTCTGCTAAGACTTTTTCAGGTGAACATAACAGACTTGGCCAAGCTAGCATCTTAGCGGAAGCTGATCTCCAATGCTCTTCAGTAGGGTCATGAAGGTTTTGCTTTTTGGCCTTTTTCTAGCTTAAAAAAAAAAAAAGCAAAAGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTCAAATCCCTGCGGCGTCTTTGCTTTGACTACTAATCTGTCTTCAGGACTCTTTCTGTATTTCTCCTTTTCTCTGCAGGTGCTAGTTCTTGGAGTTTTGGGGAGGTGGGAGGTAACAGCACAATATCTTTGAACTATATACATCCTTGATGTATAATTTGTCAGGAGCTTGACTTGATTGTATATTCATATTTACACGAGAACCTAATATAACTGCCTTGTCTTTTTCAGGTAATAGCCTGCAGCTGGTGTTTTGAGAAGCCCTACTGCTGAAAACTTAACAATTTTGTGTAATAAAAATGGAGAAGCTC
| Disease | PMID | Dysfunction_type | Data source |
| gallbladder cancer | 27420766 | expression | PMC6372806 |
| gastric cancer | 27887846 | expression | PMC6372806 |
| renal cell carcinoma | 25480417 | expression | PMC6372806 |
| gastric cancer | 28942451 | regulated | PMC6372806 |
| endometrial cancer | 27693631 | expression | PMC6372806 |
| esophageal cancer | 25613496 | regulated | PMC6372806 |
| osteosarcoma | 25431257 | regulated | PMC6372806 |
| 25773124 | PMC6372806 | ||
| hepatocellular carcinoma | 28469957 | expression | PMC6372806 |
| osteosarcoma | 28346809 | expression | PMC6372806 |
| renal cell carcinoma | 25600645 | expression | PMC6372806 |
| 28535533 | expression | PMC6372806 | |
| bladder cancer | 24449823 | expression | PMC6372806 |
| gastric cancer | 27259812 | expression | PMC6372806 |
| breast cancer | 28915533 | expression | PMC6372806 |
| breast cancer | 26917489 | regulated | PMC6372806 |
| 26335021 | PMC6372806 | ||
| gastric cancer | 25280565 | expression | PMC6372806 |
| hepatocellular carcinoma | 21678027 | expression | PMC6372806 |
| colorectal cancer | 25025966 | expression | PMC6372806 |
| cholangiocarcinoma | 28059437 | expression | PMC6372806 |
| multiple myeloma | 28295550 | expression | PMC6372806 |
| tongue cancer | 28260102 | expression | PMC6372806 |
| glioma | 26619802 | expression | PMC6372806 |
| cervical cancer | 26242259 | expression | PMC6372806 |
| colorectal cancer | 25446987 | expression | PMC6372806 |
| mantle cell lymphoma | 27998273 | expression | PMC6372806 |
| cervical cancer | 26798987 | expression | PMC6372806 |
| colorectal cancer | 28069878 | expression | PMC6372806 |
| thyroid cancer | 27470543 | expression | PMC6372806 |
| bladder cancer | 28648755 | expression | PMC6372806 |
| oral squamous cell carcinoma | 28926115 | expression | PMC6372806 |
| hepatocellular carcinoma | 28543721 | expression | PMC6372806 |
| prostate cancer | 23845456 | expression | PMC6372806 |
| gastric cancer | 28276823 | expression | PMC6372806 |
| bladder cancer | 23153939 | expression | PMC6372806 |
| non-small-cell lung cancer | 25217850 | expression | PMC6372806 |
| renal cell carcinoma | 27655020 | expression | PMC6372806 |
| choriocarcinoma | 29096355 | expression | PMC6372806 |
| oral squamous cell carcinoma | 26522444 | expression | PMC6372806 |
| breast cancer | 27197265 | expression | PMC6372806 |
| lung cancer | 23243023 | expression | PMC6372806 |
| hypertension | 28056547 | expression | PMC6372806 |
| hepatocellular carcinoma | 24468535 | expression | PMC6372806 |
| pancreatic cancer | 25269958 | expression | PMC6372806 |
| osteosarcoma | 26575981 | expression | PMC6372806 |
| breast cancer | 26676637 | expression | PMC6372806 |
| thyroid cancer | 28543663 | expression | PMC6372806 |
| hepatocellular carcinoma | 28720061 | expression | PMC6372806 |
| multiple myeloma | 25187517 | expression | PMC6372806 |
| tongue cancer | 27586393 | expression | PMC6372806 |
| gastric cancer | 28268166 | expression | PMC6372806 |
| calcific aortic valve disease | 28522163 | expression | PMC6372806 |
| esophageal cancer | 26493997 | expression | PMC6372806 |
| pancreatic cancer | 28701723 | expression | PMC6372806 |
| osteosarcoma | 28098894 | expression | PMC6372806 |
| liver fibrosis | 26435214 | expression | PMC6372806 |
| endometrial cancer | 25085246 | regulated | PMC6372806 |
| nasopharyngeal carcinoma | 27584791 | regulated | PMC6372806 |
| esophageal cancer | 27935117 | expression | PMC6372806 |
| colorectal cancer | 29436635 | expression | PMC6372806 |
| lung cancer | 28615056 | regulated | PMC6372806 |
| esophageal cancer | 27470544 | expression | PMC6372806 |
| glioma | 26938295 | expression | PMC6372806 |
| osteoarthritis | 28590075 | expression | PMC6372806 |
| hepatocellular carcinoma | 28722813 | expression | PMC6372806 |
| 29051139 | expression | PMC6372806 | |
| gallbladder cancer | 29058818 | expression | PMC6372806 |
| retinoblastoma | 29073720 | expression | PMC6372806 |
| diabetes mellitus | 29110299 | expression | PMC6372806 |
| 22487937 | expression | PMC6372806 | |
| multiple myeloma | 24583225 | expression | PMC6372806 |
| Parkinson's disease | 27021022 | expression | PMC6372806 |
| glioma | 29202181 | expression | PMC6372806 |
| osteosarcoma | 29204769 | expression | PMC6372806 |
| multiple myeloma | 29214735 | expression | PMC6372806 |
| non-small-cell lung cancer | 29215698 | expression | PMC6372806 |
| pancreatic cancer | 29215734 | expression | PMC6372806 |
| colon cancer | 29226325 | expression | PMC6372806 |
| 29227193 | expression | PMC6372806 | |
| 29258822 | expression | PMC6372806 | |
| 29274336 | expression | PMC6372806 | |
| osteosarcoma | 29290771 | expression | PMC6372806 |
| esophageal squamous cell carcinoma | 25538231 | regulation | PMC5753334 |
| gallbladder cancer | 24658096 | regulation | PMC5753334 |
| colon cancer | 25546229 | regulation | PMC5753334 |
| colorectal cancer | 25031737 | regulation | PMC5753334 |
| bladder cancer | 24373479 | regulation | PMC5753334 |
| breast cancer | 22492512 | regulation | PMC5753334 |
| breast cancer | 22996375 | regulation | PMC5753334 |
| breast cancer | 24499465 | regulation | PMC5753334 |
| cancer | 23463798 | regulation | PMC5753334 |
| cancer | 24757675 | regulation | PMC5753334 |
| tumor | 24721780 | regulation | PMC5753334 |
| prostate cancer | 23726266 | PMC5753334 | |
| cervical cancer | 24932303 | PMC5753334 | |
| pancreatic ductal adenocarcinoma | 24815433 | PMC5753334 | |
| nasopharyngeal carcinoma | 23688988 | PMC5753334 | |
| bladder cancer | 22722759 | PMC5753334 | |
| gastric cancer | 24857172 | PMC5753334 | |
| colorectal cancer | 24244343 | PMC5753334 | |
| melanoma | 24892958 | PMC5753334 | |
| breast cancer | 24525122 | PMC5753334 | |
| neuroblastoma | 24742640 | PMC5753334 | |
| prostate cancer | 22349460 | PMC5753334 | |
| osteosarcoma | 17660802 | PMC5753334 | |
| non-small cell lung cancer | 24313945 | PMC5753334 | |
| multiple myeloma | 25369863 | PMC5753334 | |
| breast cancer | 26918449 | PMC5753334 | |
| breast cancer | 26926567 | PMC5753334 | |
| gastric cancer | 26871474 | PMC5753334 | |
| acute myocardial infarction | 25035150 | PMC5753334 | |
| diabetes mellitus | 25356875 | PMC5753334 | |
| glioblastoma | 25772239 | PMC5753334 | |
| ovarian cancer | 24379988 | PMC5753334 | |
| esophageal squamous cell carcinoma | 27015363 | PMC5753334 | |
| colorectal cancer | 21503572 | PMC5753334 | |
| lung cancer | 22491206 | PMC5753334 | |
| hepatocelluar carcinoma | 22493738 | mutation | PMC5753334 |
| paraspeckle disintegration | 19188602 | mutation | PMC5753334 |
| renal cancer | 26461224 | interaction | PMC5753334 |
| nasopharyngeal carcinoma | 26482776 | interaction | PMC5753334 |
| cervical cancer | 26311052 | interaction | PMC5753334 |
| non-small cell lung cancer | 26265046 | interaction | PMC5753334 |
| lung cancer | 26415832 | interaction | PMC5753334 |
| "hepatocellular carcinoma | |||
| prostate cancer | 26516927 | interaction | PMC5753334 |
| cervical cancer | 20213048 | Interaction | PMC5753334 |
| non-small-cell lung cancer | 25036876 | interaction | PMC5753334 |
| breast cancer | 26191181 | interaction | PMC5753334 |
| pre-eclampsia | 26722461 | interaction | PMC5753334 |
| breast cancer | 26275461 | interaction | PMC5753334 |
| glioma | 26649728 | interaction | PMC5753334 |
| lung adenocarcinoma | 20937273 | interaction | PMC5753334 |
| cervical cancer | 26400521 | expression | PMC5753334 |
| proliferative vitreoretinopathy | 26241674 | expression | PMC5753334 |
| gastric cancer | 26096073 | expression | PMC5753334 |
| non-small cell lung cancer | 26131129 | expression | PMC5753334 |
| non-small cell lung cancer | 22088988 | expression | PMC5753334 |
| triple-negative breast cancer | 25996380 | expression | PMC5753334 |
| hepatocelluar carcinoma | 16878148 | expression | PMC5753334 |
| pancreatic cancer | 25811929 | expression | PMC5753334 |
| pituitary adenoma | 24469926 | expression | PMC5753334 |
| pancreatic cancer | 25481511 | expression | PMC5753334 |
| glioma | 25613066 | expression | PMC5753334 |
| non-small cell lung cancer | 12970751 | expression | PMC5753334 |
| esophageal squamous cell carcinoma | 26406400 | expression | PMC5753334 |
| laryngeal squamous cell carcinoma | 25257554 | expression | PMC5753334 |
| endometrial stromal sarcoma | 16441420 | expression | PMC5753334 |
| bladder cancer | 24006935 | expression | PMC5753334 |
| cancer | 20711585 | expression | PMC5753334 |
| cancer | 20864030 | expression | PMC5753334 |
| cancer | 23660942 | expression | PMC5753334 |
| decreased myogenesis | 23485710 | expression | PMC5753334 |
| diabetes mellitus | 24436191 | expression | PMC5753334 |
| hepatocelluar carcinoma | 17006932 | expression | PMC5753334 |
| hepatocelluar carcinoma | 24183851 | expression | PMC5753334 |
| lung adenocarcinoma | 19690017 | expression | PMC5753334 |
| lung cancer | 24667321 | expression | PMC5753334 |
| non-small cell lung cancer | 21550244 | expression | PMC5753334 |
| non-small cell lung cancer | 21903344 | expression | PMC5753334 |
| non-small cell lung cancer | 22817756 | expression | PMC5753334 |
| osteosarcoma | 20951849 | expression | PMC5753334 |
| small cell lung cancer | 22928560 | expression | PMC5753334 |
| papillary thyroid carcinoma | 25997963 | expression | PMC5753334 |
| neuroblastoma | 20149803 | expression | PMC5753334 |
| lung cancer | 26137228 | expression | PMC5753334 |
| laryngeal squamous cell carcinoma | 24817925 | expression | PMC5753334 |
| Level of interaction | Type | Target | PMID | Data source |
| DNA-TF | regulation | CREB | 20149803 | PMC5753334 |
| RNA-Protein | binding | SR | 20797886 | PMC5753334 |
| RNA-Protein | binding | SR proteins | 20797886 | PMC5753334 |
| RNA-Protein | regulation | SR protein family | 20864030 | PMC5753334 |
| RNA-Protein | regulation | SRSF1 | 20864030 | PMC5753334 |
| RNA-Protein | binding | p54nrb | 21444682 | PMC5753334 |
| RNA-Protein | binding | PSF | 21444682 | PMC5753334 |
| DNA-Protein | regulation | Pc2 | 22078878 | PMC5753334 |
| DNA-Protein | regulation | Pc2 | 22078878 | PMC5753334 |
| RNA-Protein | regulation | RNPS1 | 22355166 | PMC5753334 |
| RNA-Protein | regulation | SRm160 | 22355166 | PMC5753334 |
| RNA-Protein | regulation | IBP160 | 22355166 | PMC5753334 |
| RNA-Protein | regulation | pre-mRNA splicing factors | 23698766 | PMC5753334 |
| RNA-DNA | regulation | Bcl-2 | 25036876 | PMC5753334 |
| RNA-DNA | binding | Sp1 and LTBP3 promoter | 25187517 | PMC5753334 |
| regulation | Cisplatin and paclitaxel | 25257554 | PMC5753334 | |
| RNA-RNA | regulation | SiRNA | 25280565 | PMC5753334 |
| RNA-Protein | regulation | PI3K/AKT signaling pathway | 25431257 | PMC5753334 |
| RNA-RNA | regulation | miR-101 and miR-217 | 25538231 | PMC5753334 |
| RNA-Protein | regulation | CCL5 | 25546229 | PMC5753334 |
| RNA-Protein | regulation | ATM-CHK2 pathway | 25613496 | PMC5753334 |
| RNA-Protein | regulation | RANKL | 25817340 | PMC5753334 |
| regulation | PI3K-AKT pathway | 26191181 | PMC5753334 | |
| RNA-RNA | regulation | miRNA-124 | 26242259 | PMC5753334 |
| RNA-Protein | binding | TDP-43 | 26265046 | PMC5753334 |
| RNA-RNA | regulation | hsa-miR-1 | 26275461 | PMC5753334 |
| RNA-RNA | regulation | miR-145 | 26311052 | PMC5753334 |
| DNA-Protein | regulation | Sp1/3 | 26352013 | PMC5753334 |
| RNA-Protein | regulation | EZH2 (enhancer of zeste homolog 2) and H3K27me3 | 26415832 | PMC5753334 |
| DNA-RNA | regulation | miR-217 | 26415832 | PMC5753334 |
| RNA-RNA | binding | miR-200s | 26461224 | PMC5753334 |
| RNA-RNA | regulation | miR-1 | 26482776 | PMC5753334 |
| RNA-Protein | binding | EZH2 | 26516927 | PMC5753334 |
| RNA-Protein | regulation | N-cadherin, Vimentin, E-cadherin | 26522444 | PMC5753334 |
| RNA-Protein | regulation | ZO-1, occludin and claudin-5 | 26619802 | PMC5753334 |
| RNA-RNA | regulation | miR-140 | 26619802 | PMC5753334 |
| regulation | ERK/MAPK signaling | 26649728 | PMC5753334 | |
| RNA-Protein | regulation | Sox2 and Nestin | 26649728 | PMC5753334 |
| RNA-RNA | regulation | Hsa-miR-1 | 26676637 | PMC5753334 |
| RNA-Protein | regulation | pro-apoptotic proteins including cleaved caspase-3, cleaved caspase-9 and cleaved poly (ADP-ribose) | 26722461 | PMC5753334 |
| RNA-DNA | regulation | PCDH10 | 26871474 | PMC5753334 |
| RNA-Protein | binding | EZH2 | 26871474 | PMC5753334 |
| RNA-RNA | binding | miR-124 | 26918449 | PMC5753334 |
| RNA-DNA | regulation | cyclin-dependent kinase 4 (CDK4) | 26918449 | PMC5753334 |
| RNA-DNA | regulation | cdc42 | 26926567 | PMC5753334 |
| RNA-RNA | binding | miR-1 | 26926567 | PMC5753334 |
| Conserved in: | 10 species |
| Not found in: | 1 species |
| Most distant counterpart in: | Marmoset |
| Conserved species: | Chimp, Bonobo, Gorilla, Orangutan, Rhesus, Crab-eating macaque, Atys, Baboon, Green monkey, Marmoset |
| Not found in: | Lemur |
Human non-coding transcript
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ENSEMBL BrowserCheck the reference ENSEMBL
transcript ID
Open the region of interest in the UCSC Genome Browser